RNA–Protein interactions for RNA: ENST00000566550.1

HERPUD1-211, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 511 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-211ENST00000566550 RUVBL2Q9Y230 463 aaKnown RBP3.19□□□□□ -1.9
HERPUD1-211ENST00000566550 FOXA2Q9Y261 457 aaPredicted RBP3.19□□□□□ -1.9
HERPUD1-211ENST00000566550 ZNF510Q9Y2H8 683 aa3.19□□□□□ -1.9
HERPUD1-211ENST00000566550 TMED3Q9Y3Q3 217 aa3.19□□□□□ -1.9
HERPUD1-211ENST00000566550 GRIP1Q9Y3R0 1128 aa3.19□□□□□ -1.9
HERPUD1-211ENST00000566550 TNFRSF18Q9Y5U5 241 aa3.19□□□□□ -1.9
HERPUD1-211ENST00000566550 SQORQ9Y6N5 450 aa3.19□□□□□ -1.9
HERPUD1-211ENST00000566550 ZNF541Q9H0D2 1346 aa3.19□□□□□ -1.9
HERPUD1-211ENST00000566550 ZNF335Q9H4Z2 1342 aaPredicted RBP3.19□□□□□ -1.9
HERPUD1-211ENST00000566550 FNDC1Q4ZHG4 1894 aaPredicted RBP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 A0A0U1RQJ8 604 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 TCRBV5S1A1TA0A578 114 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 TMEM221A6NGB7 291 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 E9PBE3 544 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 SLC28A1O00337 649 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 ADAM12O43184 909 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 GRID2O43424 1007 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 DCXO43602 365 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 VPS26AO75436 327 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 RPS6KA5O75582 802 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 SURF6O75683 361 aaKnown RBP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 RNF8O76064 485 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 TOP3BO95985 862 aaKnown RBP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 C9P02748 559 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 LIPFP07098 398 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 ELFN1P0C7U0 828 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 SP9P0CG40 484 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 SMIM18P0DKX4 95 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 SAGP10523 405 aaPredicted RBP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 CD58P19256 250 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 MAOAP21397 527 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 DRD5P21918 477 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 PAX7P23759 505 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 ALDH4A1P30038 563 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 CCR1P32246 355 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 TNFSF8P32971 234 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 NSFP46459 744 aaKnown RBP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 IER3P46695 156 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 PLCD1P51178 756 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 CACNA2D1P54289 1103 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 CDH12P55289 794 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 SOX10P56693 466 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 HSF2Q03933 536 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 ARHGAP1Q07960 439 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 PRKAA1Q13131 559 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 RFTN1Q14699 578 aaPredicted RBP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 WDR43Q15061 677 aaKnown RBP eCLIP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 NONOQ15233 471 aaKnown RBP eCLIP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 PTPAQ15257 358 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 PTGISQ16647 500 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 PDK4Q16654 411 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 TIGD2Q4W5G0 525 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 TMEM41BQ5BJD5 291 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 CMPK2Q5EBM0 449 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 TMEM63BQ5T3F8 832 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 C1orf185Q5T7R7 199 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 NCAPH2Q6IBW4 605 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 PLEKHA7Q6IQ23 1121 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 ZNF534Q76KX8 674 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 ZDHHC21Q8IVQ6 265 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 STHQ8IWL8 128 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 BEST3Q8N1M1 668 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 BBS5Q8N3I7 341 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 RNF148Q8N7C7 305 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 AMER3Q8N944 861 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 ZNF398Q8TD17 642 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 SLC20A1Q8WUM9 679 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 SSMEM1Q8WWF3 244 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 RND1Q92730 232 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 SLCO4A1Q96BD0 722 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 MTERF3Q96E29 417 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 PSKH2Q96QS6 385 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 TAAR6Q96RI8 345 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 RAD9AQ99638 391 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 COQ7Q99807 217 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 PIGQQ9BRB3 760 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 HAUS8Q9BT25 410 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 LMF2Q9BU23 707 aaKnown RBP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 TSPYL1Q9H0U9 437 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 ATG10Q9H0Y0 220 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 FOXP1Q9H334 677 aaPredicted RBP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 CATSPERBQ9H7T0 1116 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 DCLRE1BQ9H816 532 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 EVA1AQ9H8M9 152 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 Q9N2K0 584 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 PNRC2Q9NPJ4 139 aaKnown RBP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 TRPV5Q9NQA5 729 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 CNGB3Q9NQW8 809 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 TRNAU1APQ9NX07 287 aaKnown RBP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 CNOT2Q9NZN8 540 aaKnown RBP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 NOCTQ9UK39 431 aaKnown RBP3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 PCDHA12Q9UN75 941 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 CHMP2BQ9UQN3 213 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 ABCC4O15439 1325 aa3.18□□□□□ -1.9
HERPUD1-211ENST00000566550 KAT6AQ92794 2004 aa3.17□□□□□ -1.9
HERPUD1-211ENST00000566550 A0A087X0K7 114 aa3.17□□□□□ -1.9
HERPUD1-211ENST00000566550 TMEM129A0AVI4 362 aa3.17□□□□□ -1.9
HERPUD1-211ENST00000566550 HYKKA2RU49 373 aa3.17□□□□□ -1.9
HERPUD1-211ENST00000566550 TMEM89A2RUT3 159 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms