RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 FAM199XQ6PEV8 388 aaPredicted RBP12.86□□□□□ -0.35
CLK3-213ENST00000563842 C3orf62Q6ZUJ4 267 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 SYVN1Q86TM6 617 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 ZC3HC1Q86WB0 502 aaKnown RBP12.86□□□□□ -0.35
CLK3-213ENST00000563842 CCDC25Q86WR0 208 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 FAM20CQ8IXL6 584 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 MMGT1Q8N4V1 131 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 NKAPQ8N5F7 415 aaKnown RBP12.86□□□□□ -0.35
CLK3-213ENST00000563842 SLC38A9Q8NBW4 561 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 ZNF480Q8WV37 535 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 LINGO1Q96FE5 620 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 MED8Q96G25 268 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 PDLIM5Q96HC4 596 aaKnown RBP12.86□□□□□ -0.35
CLK3-213ENST00000563842 ACAT2Q9BWD1 397 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 NLNQ9BYT8 704 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 FAM129AQ9BZQ8 928 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 SPRTNQ9H040 489 aaPredicted RBP12.86□□□□□ -0.35
CLK3-213ENST00000563842 PCBD2Q9H0N5 130 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 TSPYL1Q9H0U9 437 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 CHST8Q9H2A9 424 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 RHOJQ9H4E5 214 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 SLC17A6Q9P2U8 582 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 POLHQ9Y253 713 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 PADI2Q9Y2J8 665 aa12.86□□□□□ -0.35
CLK3-213ENST00000563842 FAM95CA0A1B0GW59 222 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 CTAGE15A4D2H0 777 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 KRT87PA6NCN2 255 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 H3BMH7 237 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 CTAGE8P0CG41 777 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 PIM1P11309 404 aaPredicted RBP12.85□□□□□ -0.35
CLK3-213ENST00000563842 CCND1P24385 295 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 HRH2P25021 359 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 PSMB5P28074 263 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 MAGEA4P43358 317 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 AP1S2P56377 157 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 ERV3-1Q14264 604 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 GRM7Q14831 915 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 GLE1Q53GS7 698 aaKnown RBP12.85□□□□□ -0.35
CLK3-213ENST00000563842 ICE2Q659A1 982 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 SUSD1Q6UWL2 747 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 CAPN12Q6ZSI9 719 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 CTAGE6Q86UF2 777 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 CTAGE4Q8IX94 777 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 ZNF655Q8N720 491 aaPredicted RBP12.85□□□□□ -0.35
CLK3-213ENST00000563842 TTC29Q8NA56 475 aaPredicted RBP12.85□□□□□ -0.35
CLK3-213ENST00000563842 APOBEC4Q8WW27 367 aaKnown RBP12.85□□□□□ -0.35
CLK3-213ENST00000563842 ANKRD7Q92527 254 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 TSPAN17Q96FV3 270 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 CPNE1Q99829 537 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 SELENOSQ9BQE4 189 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 LRRC1Q9BTT6 524 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 DPH7Q9BTV6 452 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 DHRS4Q9BTZ2 278 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 ADNPQ9H2P0 1102 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 ACTL8Q9H568 366 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 AKIRIN1Q9H9L7 192 aaPredicted RBP12.85□□□□□ -0.35
CLK3-213ENST00000563842 POPDC3Q9HBV1 291 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 CCDC177Q9NQR7 707 aaPredicted RBP12.85□□□□□ -0.35
CLK3-213ENST00000563842 ENAMQ9NRM1 1142 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 MTRF1LQ9UGC7 380 aaKnown RBP12.85□□□□□ -0.35
CLK3-213ENST00000563842 GPN3Q9UHW5 284 aaPredicted RBP12.85□□□□□ -0.35
CLK3-213ENST00000563842 SNX7Q9UNH6 387 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 PDE10AQ9Y233 779 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 KLHL20Q9Y2M5 609 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 MRPS18BQ9Y676 258 aaKnown RBP12.85□□□□□ -0.35
CLK3-213ENST00000563842 ATMQ13315 3056 aa12.85□□□□□ -0.35
CLK3-213ENST00000563842 OR2A25A4D2G3 310 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 ENO2P09104 434 aaPredicted RBP12.84□□□□□ -0.35
CLK3-213ENST00000563842 SAT1P21673 171 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 IMPA1P29218 277 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 STX2P32856 288 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 DCDP81605 110 aaKnown RBP12.84□□□□□ -0.35
CLK3-213ENST00000563842 SLC7A5Q01650 507 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 POU4F1Q01851 419 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 GUCY2DQ02846 1103 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 RELAQ04206 551 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 C19orf57Q0VDD7 668 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 PTCHD3Q3KNS1 767 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 LINC00303Q3SY05 128 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 PCSK4Q6UW60 755 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 RNF44Q7L0R7 432 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 CEP112Q8N8E3 955 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 ATL1Q8WXF7 558 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 THAP4Q8WY91 577 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 OLFM1Q99784 485 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 ZFYVE21Q9BQ24 234 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 PLCD4Q9BRC7 762 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 STOX2Q9P2F5 926 aaPredicted RBP12.84□□□□□ -0.35
CLK3-213ENST00000563842 NDOR1Q9UHB4 597 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 TAC3Q9UHF0 121 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 PSAT1Q9Y617 370 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 MED13Q9UHV7 2174 aa12.84□□□□□ -0.35
CLK3-213ENST00000563842 SMG1Q96Q15 3661 aaKnown RBP12.84□□□□□ -0.35
CLK3-213ENST00000563842 A0A0J9YVX5 310 aa12.83□□□□□ -0.36
CLK3-213ENST00000563842 TCRBV9S1A1TA0A576 114 aa12.83□□□□□ -0.36
CLK3-213ENST00000563842 CDC14CA4D256 554 aa12.83□□□□□ -0.36
CLK3-213ENST00000563842 TXNDC9O14530 226 aa12.83□□□□□ -0.36
CLK3-213ENST00000563842 HCRTR1O43613 425 aa12.83□□□□□ -0.36
CLK3-213ENST00000563842 TSPAN12O95859 305 aa12.83□□□□□ -0.36
CLK3-213ENST00000563842 ZNF37AP17032 561 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms