RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 ATP5C1P36542 298 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 CCDC71Q8IV32 467 aaPredicted RBP13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 ELMOD1Q8N336 334 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 FAM83FQ8NEG4 500 aaPredicted RBP13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 CAPSLQ8WWF8 208 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 PROX1Q92786 737 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 DNASE1L2Q92874 299 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 TBC1D20Q96BZ9 403 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 HSH2DQ96JZ2 352 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 EGLN2Q96KS0 407 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 PANX1Q96RD7 426 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 CRISPLD1Q9H336 500 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 AMBNQ9NP70 447 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 THUMPD1Q9NXG2 353 aaKnown RBP13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 DNMT3LQ9UJW3 386 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 RNF6Q9Y252 685 aa13.59□□□□□ -0.23
VPS9D1-202ENST00000561976 LOC100506127A0A0U1RQW1 187 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 CLIC1O00299 241 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 NBNO60934 754 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 PRPS2P11908 318 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 ZNF24P17028 368 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 ENGP17813 658 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 ALOX12P18054 663 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 EFNA1P20827 205 aaPredicted RBP13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 S100A1P23297 94 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 GADD45AP24522 165 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 PTPN6P29350 595 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 S100A5P33763 92 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 KDELR2P33947 212 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 CA5AP35218 305 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 CAMK2GQ13555 558 aaPredicted RBP13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 C5orf22Q49AR2 442 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 GPR153Q6NV75 609 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 ZNF621Q6ZSS3 439 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 BEND7Q8N7W2 519 aaPredicted RBP13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 TXNDC15Q96J42 360 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 METTL15A6NJ78 407 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 TAF4O00268 1085 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 FPGTO14772 594 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 NUAK1O60285 661 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 DUSP11O75319 330 aaKnown RBP13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 VIPP01282 170 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 C21orf33P30042 268 aaPredicted RBP13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 HMGCLP35914 325 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 CTSKP43235 329 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 TRPC1P48995 793 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 TIGD6Q17RP2 521 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 VMACQ2NL98 169 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 PRSS36Q5K4E3 855 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 TPRG1LQ5T0D9 272 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 C6orf183Q5T699 404 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 ATXN7L2Q5T6C5 722 aaPredicted RBP13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 UBE2UQ5VVX9 321 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 PDE12Q6L8Q7 609 aaKnown RBP13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 NCEH1Q6PIU2 408 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 ZNF598Q86UK7 904 aaKnown RBP13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 CCDC103Q8IW40 242 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 ENTHD1Q8IYW4 607 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 AMER2Q8N7J2 671 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 NELL1Q92832 810 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 APOLD1Q96LR9 279 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 SLC29A3Q9BZD2 475 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 RUBCNLQ9H714 662 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 SIRT5Q9NXA8 310 aa13.58□□□□□ -0.24
VPS9D1-202ENST00000561976 KCNK2O95069 426 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 ANXA5P08758 320 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 SDC1P18827 310 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 KIR3DL1P43629 444 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 RHOAP61586 193 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 ARF5P84085 180 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 DUSP4Q13115 394 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 TTLL9Q3SXZ7 439 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 C9orf131Q5VYM1 1079 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 TUBA3EQ6PEY2 450 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 Q6ZPB1 254 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 RNF165Q6ZSG1 346 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 USP43Q70EL4 1123 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 CCDC80Q76M96 950 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 SERPINA11Q86U17 422 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 HEATR4Q86WZ0 1026 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 FAM9CQ8IZT9 166 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 CDC26Q8NHZ8 85 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 FCGR1BQ92637 280 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 KCNC2Q96PR1 638 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 DPH2Q9BQC3 489 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 ARL15Q9NXU5 204 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 CRLS1Q9UJA2 301 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 VPS4AQ9UN37 437 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 NUP214P35658 2090 aaPredicted RBP13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 MTMR11A4FU01 709 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 PABPN1LA6NDY0 278 aaKnown RBP13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 SCAMP3O14828 347 aaKnown RBP13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 EPN2O95208 641 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 CPSF4O95639 269 aaKnown RBP13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 IRF1P10914 325 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 SPNP16150 400 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 ITGALP20701 1170 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 MAPK1P28482 360 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 UGT2B10P36537 528 aa13.57□□□□□ -0.24
VPS9D1-202ENST00000561976 NR4A2P43354 598 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms