RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 PCBD2Q9H0N5 130 aa10.85□□□□□ -0.67
USP3-218ENST00000560202 PFDN4Q9NQP4 134 aa10.85□□□□□ -0.67
USP3-218ENST00000560202 POT1Q9NUX5 634 aa10.85□□□□□ -0.67
USP3-218ENST00000560202 CPNE7Q9UBL6 633 aa10.85□□□□□ -0.67
USP3-218ENST00000560202 PTGDR2Q9Y5Y4 395 aa10.85□□□□□ -0.67
USP3-218ENST00000560202 A0A0C4DFX4 3053 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 ANKRD12Q6UB98 2062 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 KCNE1BA0A087WTH5 132 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 A0A1W2PPV9 198 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 E9PBE3 544 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 FCHO1O14526 889 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 FFAR3O14843 346 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 YY2O15391 372 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 GPR42O15529 346 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 AQP9O43315 295 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 KLHL41O60662 606 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 CCDC22O60826 627 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 SMNDC1O75940 238 aaKnown RBP eCLIP10.84□□□□□ -0.67
USP3-218ENST00000560202 FESP07332 822 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 JUPP14923 745 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 CASP2P42575 452 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 CTSKP43235 329 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 HTR6P50406 440 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 UBE2IP63279 158 aaKnown RBP10.84□□□□□ -0.67
USP3-218ENST00000560202 E2F2Q14209 437 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 ANGPT1Q15389 498 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 CPSF6Q16630 551 aaKnown RBP eCLIP10.84□□□□□ -0.67
USP3-218ENST00000560202 METTL21CQ5VZV1 264 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 IL27RAQ6UWB1 636 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 SCIMPQ6UWF3 145 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 SLCO4C1Q6ZQN7 724 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 AMIGO1Q86WK6 493 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 SFTPA2Q8IWL1 248 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 SDR16C5Q8N3Y7 309 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 ZBTB44Q8NCP5 570 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 ZNF548Q8NEK5 533 aaPredicted RBP10.84□□□□□ -0.67
USP3-218ENST00000560202 CEP70Q8NHQ1 597 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 ACTRT2Q8TDY3 377 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 SLC37A2Q8TED4 501 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 ZFPM2Q8WW38 1151 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 SLC5A11Q8WWX8 675 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 LCN9Q8WX39 176 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 JPH3Q8WXH2 748 aaPredicted RBP10.84□□□□□ -0.67
USP3-218ENST00000560202 PIGKQ92643 395 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 ERP27Q96DN0 273 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 PRR11Q96HE9 360 aaPredicted RBP10.84□□□□□ -0.67
USP3-218ENST00000560202 NMUR2Q9GZQ4 415 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 ETAA1Q9NY74 926 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 TAC3Q9UHF0 121 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 BAIAP2L1Q9UHR4 511 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 DOLKQ9UPQ8 538 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 SH2B3Q9UQQ2 575 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 SNX11Q9Y5W9 270 aa10.84□□□□□ -0.67
USP3-218ENST00000560202 ATP6AP2A0A1C7CYW4 349 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 B4DGG1 531 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 MANBAO00462 879 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 SDC3O75056 442 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 ULK1O75385 1050 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 ATP6AP2O75787 350 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 PIAS2O75928 621 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 KRT6AP02538 564 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 KRT6BP04259 564 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 SERPINA6P08185 405 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 ATXN8OSP0DMR3 200 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 C1GALT1C1LP0DN25 315 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 CD22P20273 847 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 VARSP26640 1264 aaKnown RBP10.83□□□□□ -0.68
USP3-218ENST00000560202 SHMT2P34897 504 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 HNF4AP41235 474 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 KRT6CP48668 564 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 BNC1Q01954 994 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 BLMHQ13867 455 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 SIM2Q14190 667 aaPredicted RBP10.83□□□□□ -0.68
USP3-218ENST00000560202 ABRAXAS2Q15018 415 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 ZRSR2Q15696 482 aaKnown RBP10.83□□□□□ -0.68
USP3-218ENST00000560202 TBCCQ15814 346 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 XKR7Q5GH72 579 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 SPDYAQ5MJ70 313 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 CATSPEREQ5SY80 951 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 ATG9BQ674R7 924 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 NXPE4Q6UWF7 544 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 RNF165Q6ZSG1 346 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 LARP4Q71RC2 724 aaKnown RBP eCLIP10.83□□□□□ -0.68
USP3-218ENST00000560202 CLNKQ7Z7G1 428 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 TMPRSS11BQ86T26 416 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 SYT12Q8IV01 421 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 OR4E2Q8NGC2 313 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 USP7Q93009 1102 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 SPDL1Q96EA4 605 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 WDR34Q96EX3 536 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 PTCD3Q96EY7 689 aaKnown RBP10.83□□□□□ -0.68
USP3-218ENST00000560202 ACAT2Q9BWD1 397 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 MYLK2Q9H1R3 596 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 EHD1Q9H4M9 534 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 OR6C2Q9NZP2 312 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 ZFP69BQ9UJL9 534 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 SNX6Q9UNH7 406 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 TRIM33Q9UPN9 1127 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 CEP192Q8TEP8 1941 aa10.83□□□□□ -0.68
USP3-218ENST00000560202 LMO7DNF2Z398 122 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms