RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	PRPS1L1	P21108	318 aa		15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	PTX3	P26022	381 aa	Predicted RBP	15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	KIR3DL1	P43629	444 aa		15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	AP1S1	P61966	158 aa		15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	RPS24	P62847	133 aa	Known RBP	15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	SRSF11	Q05519	484 aa	Known RBP	15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	GPR33	Q49SQ1	333 aa		15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	SGO1	Q5FBB7	561 aa		15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	NEK5	Q6P3R8	708 aa		15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	CCDC80	Q76M96	950 aa		15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	P3H2	Q8IVL5	708 aa		15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	ATG16L2	Q8NAA4	619 aa		15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	FAM193B	Q96PV7	902 aa	Predicted RBP	15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	SMIM14	Q96QK8	99 aa		15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	INPP5K	Q9BT40	448 aa		15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	FNDC3A	Q9Y2H6	1198 aa	Known RBP	15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	IFT52	Q9Y366	437 aa		15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	MICAL3	Q7RTP6	2002 aa		15.83	■□□□□ 0.12
SHMT2-231	ENST00000557433	B4GALT3	O60512	393 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	EPN2	O95208	641 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	ACRV1	P26436	265 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	GDF5	P43026	501 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	CTSK	P43235	329 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	PTPN5	P54829	565 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	TPTE	P56180	551 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	RPP38	P78345	283 aa	Known RBP	15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	IL1RL1	Q01638	556 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	TWF1	Q12792	350 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	NFATC2	Q13469	925 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	TOR1AIP1	Q5JTV8	583 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	ARMC12	Q5T9G4	340 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	LAIR1	Q6GTX8	287 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	PRR23C	Q6ZRP0	262 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	ZZZ3	Q8IYH5	903 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	SELENOM	Q8WWX9	145 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	SEPT5	Q99719	369 aa	Predicted RBP	15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	ALOXE3	Q9BYJ1	711 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	ELOVL6	Q9H5J4	265 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	KCTD5	Q9NXV2	234 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	LHX3	Q9UBR4	397 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	PNMA8C	A0A1B0GUJ8	204 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	WBP4	O75554	376 aa	Known RBP	15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	RFPL2	O75678	378 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	OXSR1	O95747	527 aa	Predicted RBP	15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	PDYN	P01213	254 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	S100A5	P33763	92 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	C21orf58	P58505	322 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	ARF5	P84085	180 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	CATSPERE	Q5SY80	951 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	RNF219	Q5W0B1	726 aa	Predicted RBP	15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	SLC24A5	Q71RS6	500 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	DSG4	Q86SJ6	1040 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	C10orf111	Q8N326	155 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	CLHC1	Q8NHS4	586 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	MYO19	Q96H55	970 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	FCRL1	Q96LA6	429 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	BARD1	Q99728	777 aa	Known RBP	15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	SLX1A	Q9BQ83	275 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	COPS4	Q9BT78	406 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	ASB8	Q9H765	288 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	SACM1L	Q9NTJ5	587 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	FAM120C	Q9NX05	1096 aa	Known RBP	15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	THUMPD1	Q9NXG2	353 aa	Known RBP	15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	KLHL3	Q9UH77	587 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	PSORS1C1	Q9UIG5	152 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	MAPRE3	Q9UPY8	281 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	CORO2B	Q9UQ03	480 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	RNF6	Q9Y252	685 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	DLGAP4	Q9Y2H0	992 aa		15.82	■□□□□ 0.12
SHMT2-231	ENST00000557433	SLC38A8	A6NNN8	435 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	CLIC1	O00299	241 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	SNPH	O15079	494 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	ASNA1	O43681	348 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	KCNK5	O95279	499 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	PGLS	O95336	258 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	RPLP0	P05388	317 aa	Known RBP	15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	SDC1	P18827	310 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	PPIB	P23284	216 aa	Known RBP	15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	DEFA1	P59665	94 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	DEFA3	P59666	94 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	OLR1	P78380	273 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	CAMK2G	Q13555	558 aa	Predicted RBP	15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	SLX4IP	Q5VYV7	408 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	ZCCHC8	Q6NZY4	707 aa	Known RBP	15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	AHSA2	Q719I0	299 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	SNX29P2	Q8IUI4	249 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	CBARP	Q8N350	705 aa	Predicted RBP	15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	L3MBTL4	Q8NA19	623 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	PROX1	Q92786	737 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	RAD9A	Q99638	391 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	FKBP14	Q9NWM8	211 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	RAPGEFL1	Q9UHV5	662 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	MKLN1	Q9UL63	735 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	PPT2	Q9UMR5	302 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	PRG3	Q9Y2Y8	225 aa	Predicted RBP	15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	PCDHB9	Q9Y5E1	797 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	PCDHGB3	Q9Y5G1	929 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	PEX16	Q9Y5Y5	336 aa		15.81	■□□□□ 0.12
SHMT2-231	ENST00000557433	KCNE1B	A0A087WTH5	132 aa		15.8	■□□□□ 0.12
SHMT2-231	ENST00000557433	ZBBX	A8MT70	800 aa		15.8	■□□□□ 0.12

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