RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 PILRAQ9UKJ1 303 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 TMEM184BQ9Y519 407 aaPredicted RBP13.57□□□□□ -0.24
PTCH1-226ENST00000553011 IKBKGQ9Y6K9 419 aa13.57□□□□□ -0.24
PTCH1-226ENST00000553011 ITPR1Q14643 2758 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 IGKV1-8A0A0C4DH67 115 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 RAD1O60671 282 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 CTSVO60911 334 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 ALDOAP04075 364 aaKnown RBP13.56□□□□□ -0.24
PTCH1-226ENST00000553011 NTRK1P04629 796 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 C2P06681 752 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 MSL3P1P0C860 447 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 GCAP28676 217 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 SERPINB9P50453 376 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 CSRP3P50461 194 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 IRF9Q00978 393 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 PRDX1Q06830 199 aaKnown RBP13.56□□□□□ -0.24
PTCH1-226ENST00000553011 SRSF6Q13247 344 aaKnown RBP13.56□□□□□ -0.24
PTCH1-226ENST00000553011 COL9A2Q14055 689 aaPredicted RBP13.56□□□□□ -0.24
PTCH1-226ENST00000553011 OR4D1Q15615 310 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 ERCC6LQ2NKX8 1250 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 PRAMEF13Q5VWM6 474 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 VASH2Q86V25 355 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 BPHLQ86WA6 291 aaPredicted RBP13.56□□□□□ -0.24
PTCH1-226ENST00000553011 TMEM126BQ8IUX1 230 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 GALNT6Q8NCL4 622 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 OR8K5Q8NH50 307 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 HNRNPLLQ8WVV9 542 aaKnown RBP13.56□□□□□ -0.24
PTCH1-226ENST00000553011 NKD1Q969G9 470 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 ZUFSPQ96AP4 578 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 PTERQ96BW5 349 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 PYCR2Q96C36 320 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 FCRL4Q96PJ5 515 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 DPH7Q9BTV6 452 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 DPH1Q9BZG8 443 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 IGSF5Q9NSI5 407 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 CUEDC1Q9NWM3 386 aaPredicted RBP13.56□□□□□ -0.24
PTCH1-226ENST00000553011 PLCL2Q9UPR0 1127 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 SH2B3Q9UQQ2 575 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 OARD1Q9Y530 152 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 KLK4Q9Y5K2 254 aa13.56□□□□□ -0.24
PTCH1-226ENST00000553011 A0A096LPK6 155 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 OR2A25A4D2G3 310 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 TARM1B6A8C7 271 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 TRIM49D1C9J1S8 452 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 SCRG1O75711 98 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 CCNDBP1O95273 360 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 LTA4HP09960 611 aaKnown RBP13.55□□□□□ -0.24
PTCH1-226ENST00000553011 TYK2P29597 1187 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 SERPINB8P50452 374 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 ITGA1P56199 1179 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 ATP6V0D1P61421 351 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 TLE3Q04726 772 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 FRA10AC1Q70Z53 315 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 TAOK1Q7L7X3 1001 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 TBC1D1Q86TI0 1168 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-226ENST00000553011 PAQR7Q86WK9 346 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 MCATQ8IVS2 390 aaKnown RBP13.55□□□□□ -0.24
PTCH1-226ENST00000553011 CACNA2D3Q8IZS8 1091 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 CENPLQ8N0S6 344 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-226ENST00000553011 OR56A3Q8NH54 315 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 KCTD4Q8WVF5 259 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 UBLCP1Q8WVY7 318 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-226ENST00000553011 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.55□□□□□ -0.24
PTCH1-226ENST00000553011 N4BP2L2Q92802 583 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-226ENST00000553011 NXNL1Q96CM4 212 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 EGFL8Q99944 293 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 DHRS4Q9BTZ2 278 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 SGPP1Q9BX95 441 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 SPRTNQ9H040 489 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-226ENST00000553011 EURLQ9NYK6 297 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 ZNF180Q9UJW8 692 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 SERTAD3Q9UJW9 196 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 TLK1Q9UKI8 766 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 ACOT9Q9Y305 439 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 LAMA5O15230 3695 aa13.55□□□□□ -0.24
PTCH1-226ENST00000553011 SCN3AQ9NY46 2000 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 A0A087X1B8 175 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 A0A0J9YVX5 310 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 NCF1BA6NI72 391 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-226ENST00000553011 NCF1CA8MVU1 366 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-226ENST00000553011 H3BMH7 237 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 OR2B3O76000 313 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 KRT38O76015 456 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 ANXA5P08758 320 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 NCF1P14598 390 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-226ENST00000553011 TFEBP19484 476 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 MAGEA12P43365 314 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 KCNC1P48547 511 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 ATP1A2P50993 1020 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 ABATP80404 500 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 CDKL1Q00532 357 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 TGFBIQ15582 683 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 C18orf21Q32NC0 220 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-226ENST00000553011 TAF1BQ53T94 588 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-226ENST00000553011 ZNF425Q6IV72 752 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 CAPN13Q6MZZ7 669 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-226ENST00000553011 WDR93Q6P2C0 686 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 C19orf48Q6RUI8 117 aa13.54□□□□□ -0.24
PTCH1-226ENST00000553011 C6orf15Q6UXA7 325 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-226ENST00000553011 GPSM1Q86YR5 675 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms