RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ITPKAP23677 461 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 DGKAP23743 735 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 ZNF280AP59817 542 aaPredicted RBP13.89□□□□□ -0.19
LIMS1-215ENST00000544547 PTSQ03393 145 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 BCL2L1Q07817 233 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 OR4F3Q6IEY1 312 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 FAM151BQ6UXP7 276 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 LAPTM4BQ86VI4 370 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 KRTCAP2Q8N6L1 136 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 BPIFB1Q8TDL5 484 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 HMCESQ96FZ2 354 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 ANKHQ9HCJ1 492 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 GPR83Q9NYM4 423 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 RBPJLQ9UBG7 517 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 PHLPP1O60346 1717 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 STRCP1A6NGW2 1772 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 TREHO43280 583 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 CKBP12277 381 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 PRDX3P30048 256 aaKnown RBP13.89□□□□□ -0.19
LIMS1-215ENST00000544547 PIGAP37287 484 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 MAGEA3P43357 314 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 AIF1P55008 147 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 PLA2G4EQ3MJ16 856 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 CYP27C1Q4G0S4 372 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 ANKRD34AQ69YU3 496 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 OR4F6Q8NGB9 312 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 SLC22A17Q8WUG5 538 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 TMEM174Q8WUU8 243 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 ABCB8Q9NUT2 735 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 PRAMEF1O95521 474 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 GABRB3P28472 473 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 SUZ12Q15022 739 aaKnown RBP13.88□□□□□ -0.19
LIMS1-215ENST00000544547 MSANTD2Q6P1R3 559 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 C16orf59Q7L2K0 433 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 LYSMD2Q8IV50 215 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 LSM14AQ8ND56 463 aaKnown RBP13.88□□□□□ -0.19
LIMS1-215ENST00000544547 ZNF671Q8TAW3 534 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 FAM83DQ9H4H8 585 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 HMX1Q9NP08 348 aaPredicted RBP13.88□□□□□ -0.19
LIMS1-215ENST00000544547 IGSF5Q9NSI5 407 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 PCDHGC4Q9Y5F7 938 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 MEIOCA2RUB1 952 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 NFKBIEO00221 500 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 KERAO60938 352 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 HPRP00739 348 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 EPORP19235 508 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 EMX2Q04743 252 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 IQCCQ4KMZ1 466 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 LGI4Q8N135 537 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 OR52B6Q8NGF0 335 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 PPTC7Q8NI37 304 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 SLC35B4Q969S0 331 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 MUL1Q969V5 352 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 NPY6RQ99463 290 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 MGLLQ99685 303 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 TM6SF2Q9BZW4 377 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 E9PAM4 449 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 CLIC1O00299 241 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 EEDO75530 441 aaKnown RBP13.88□□□□□ -0.19
LIMS1-215ENST00000544547 OR4Q2P0C623 313 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 TYMPP19971 482 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 SSTR4P31391 388 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 ATP5C1P36542 298 aaKnown RBP13.88□□□□□ -0.19
LIMS1-215ENST00000544547 ARSDP51689 593 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 GALNT2Q10471 571 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 RPA4Q13156 261 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 ARMC12Q5T9G4 340 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 CLEC20AQ6ZU45 233 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 VTCN1Q7Z7D3 282 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 IQCF2Q8IXL9 164 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 EEF1AKMT1Q8WVE0 214 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 RACGAP1Q9H0H5 632 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 PPIL3Q9H2H8 161 aaKnown RBP13.88□□□□□ -0.19
LIMS1-215ENST00000544547 MTMR10Q9NXD2 777 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 MS4A12Q9NXJ0 267 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 TNRC6CQ9HCJ0 1690 aaKnown RBP13.88□□□□□ -0.19
LIMS1-215ENST00000544547 J3KR12 359 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 TPST2O60704 377 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 BEST1O76090 585 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 TOXO94900 526 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 KDM4BO94953 1096 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 GLUD1P00367 558 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 GSRP00390 522 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 CYP2A7P20853 494 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 PAICSP22234 425 aaKnown RBP13.88□□□□□ -0.19
LIMS1-215ENST00000544547 E2F2Q14209 437 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 RD3Q7Z3Z2 195 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 CLEC14AQ86T13 490 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 SCAMP5Q8TAC9 235 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 PMEPA1Q969W9 287 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 HSH2DQ96JZ2 352 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 SLC9A7Q96T83 725 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 COPS8Q99627 209 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 TTPALQ9BTX7 342 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 MRPL9Q9BYD2 267 aaKnown RBP13.88□□□□□ -0.19
LIMS1-215ENST00000544547 MKRN2Q9H000 416 aaKnown RBP13.88□□□□□ -0.19
LIMS1-215ENST00000544547 RNF208Q9H0X6 261 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 MCUBQ9NWR8 336 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 NLKQ9UBE8 527 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 FKBPLQ9UIM3 349 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms