RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 DLG1Q12959 904 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 TARDBPQ13148 414 aaKnown RBP eCLIP16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 NAE1Q13564 534 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 IL11RAQ14626 422 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 OR4D1Q15615 310 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 PRAMEF13Q5VWM6 474 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 ICE2Q659A1 982 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 ZNF574Q6ZN55 896 aaPredicted RBP16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 FAM92BQ6ZTR7 304 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 RAB11FIP2Q7L804 512 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 LRRC70Q7Z2Q7 622 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 LRRC56Q8IYG6 542 aaPredicted RBP16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 FBXO39Q8N4B4 442 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 SPATA6LQ8N4H0 392 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 OR2A1Q8NGT9 310 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 UBTD2Q8WUN7 234 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 MED8Q96G25 268 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 APOPT1Q96IL0 206 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 MAGEB10Q96LZ2 347 aaPredicted RBP16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 IL17FQ96PD4 163 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 MAP3K3Q99759 626 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 ASPSCR1Q9BZE9 553 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 TMEM184CQ9NVA4 438 aa16.89■□□□□ 0.29
CLSTN3-210ENST00000540931 JMJD7P0C870 316 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 GNAZP19086 355 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 GLRBP48167 497 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 PGGT1BP53609 377 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 GFERP55789 205 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 TBPL1P62380 186 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 TSTA3Q13630 321 aaPredicted RBP16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 IGF2-ASQ6U949 168 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 SH2D5Q6ZV89 423 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 SRRM1Q8IYB3 904 aaKnown RBP16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 CYP4X1Q8N118 509 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 D2HGDHQ8N465 521 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 CHCHD4Q8N4Q1 142 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 C19orf47Q8N9M1 422 aaKnown RBP16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 OR2L3Q8NG85 312 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 JPH3Q8WXH2 748 aaPredicted RBP16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 N4BP2L2Q92802 583 aaPredicted RBP16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 THAP11Q96EK4 314 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 TRAPPC9Q96Q05 1148 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 CD244Q9BZW8 370 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 CENPHQ9H3R5 247 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 FBXO8Q9NRD0 319 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 SOHLH2Q9NX45 425 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 XPR1Q9UBH6 696 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 STK38LQ9Y2H1 464 aa16.88■□□□□ 0.29
CLSTN3-210ENST00000540931 A0A1W2PPM1 405 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 A0A1W2PPV9 198 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 H3BQF6 201 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 TXNDC9O14530 226 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 PLD2O14939 933 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 CLGNO14967 610 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 ATP8B1O43520 1251 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 SRPX2O60687 465 aaPredicted RBP16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 ATP5F1P24539 256 aaPredicted RBP16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 GSTM2P28161 218 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 SLC6A12P48065 614 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 LSSP48449 732 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 NFKB2Q00653 900 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 SETDB1Q15047 1291 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 PCBP2Q15366 365 aaKnown RBP eCLIP16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 PTCHD3Q3KNS1 767 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 SNAP47Q5SQN1 464 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 PLD6Q8N2A8 252 aaKnown RBP16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 NXPE2Q96DL1 559 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 SEC16BQ96JE7 1060 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 ATG10Q9H0Y0 220 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 EHD1Q9H4M9 534 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 POLR1BQ9H9Y6 1135 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 DNAJC11Q9NVH1 559 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 SPHK1Q9NYA1 384 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 OPTCQ9UBM4 332 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 KLHL3Q9UH77 587 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 TAC3Q9UHF0 121 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 MSRB2Q9Y3D2 182 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 ANGPTL3Q9Y5C1 460 aa16.87■□□□□ 0.29
CLSTN3-210ENST00000540931 KNTC1P50748 2209 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 NCF1BA6NI72 391 aaPredicted RBP16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 NCF1CA8MVU1 366 aaPredicted RBP16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 GOLGA8RI6L899 631 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 TM9SF1O15321 606 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 H2AFYO75367 372 aaKnown RBP16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 NCF1P14598 390 aaPredicted RBP16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 EZRP15311 586 aaKnown RBP16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 EPB42P16452 691 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 NPPBP16860 134 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 RBMS1P29558 406 aaKnown RBP16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 HPDP32754 393 aaPredicted RBP16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 PDX1P52945 283 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 PRKAA2P54646 552 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 LAPTM5Q13571 262 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 FASTKQ14296 549 aaKnown RBP16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 PDK4Q16654 411 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 TNFAIP8L3Q5GJ75 292 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 TCTE1Q5JU00 501 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 AGBL2Q5U5Z8 902 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 FIGLAQ6QHK4 219 aa16.86■□□□□ 0.29
CLSTN3-210ENST00000540931 SUSD1Q6UWL2 747 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms