RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ERLIN1O75477 346 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 GPC4O75487 556 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 AKAP3O75969 853 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 KCNK5O95279 499 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 NPPAP01160 153 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 TPM3P06753 285 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 UBA1P22314 1058 aaKnown RBP4.61□□□□□ -1.67
CD44-220ENST00000525688 AHCYP23526 432 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 HNRNPH1P31943 449 aaKnown RBP4.61□□□□□ -1.67
CD44-220ENST00000525688 CCR1P32246 355 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 MC5RP33032 325 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 CTAG1AP78358 180 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 CXCL9Q07325 125 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 GRSF1Q12849 480 aaKnown RBP eCLIP4.61□□□□□ -1.67
CD44-220ENST00000525688 GRIK2Q13002 908 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 KCNC3Q14003 757 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 PTGR1Q14914 329 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 EFTUD2Q15029 972 aaKnown RBP eCLIP4.61□□□□□ -1.67
CD44-220ENST00000525688 SRSF7Q16629 238 aaKnown RBP eCLIP4.61□□□□□ -1.67
CD44-220ENST00000525688 HADHQ16836 314 aaKnown RBP4.61□□□□□ -1.67
CD44-220ENST00000525688 PNLIPRP3Q17RR3 467 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 CFAP221Q4G0U5 840 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 FILIP1LQ4L180 1135 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 LRRC23Q53EV4 343 aaPredicted RBP4.61□□□□□ -1.67
CD44-220ENST00000525688 FBXO48Q5FWF7 155 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 PPP6R3Q5H9R7 873 aaPredicted RBP4.61□□□□□ -1.67
CD44-220ENST00000525688 CLEC2AQ6UVW9 174 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 C15orf39Q6ZRI6 1047 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 Q6ZSV7 163 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 KCTD9Q7L273 389 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 MRPL10Q7Z7H8 261 aaKnown RBP4.61□□□□□ -1.67
CD44-220ENST00000525688 SPATA24Q86W54 205 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 LRRC49Q8IUZ0 686 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 DNAJC10Q8IXB1 793 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 KDM8Q8N371 416 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 RASGEF1CQ8N431 466 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 LINC00469Q8N7U9 141 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 NHLRC2Q8NBF2 726 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 CAMKVQ8NCB2 501 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 C7orf57Q8NEG2 295 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 LPCAT1Q8NF37 534 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 OR8K3Q8NH51 312 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 TMEM186Q96B77 213 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 URB1-AS1Q96HZ7 61 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 PIWIL1Q96J94 861 aaKnown RBP4.61□□□□□ -1.67
CD44-220ENST00000525688 CAMK1GQ96NX5 476 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 INTS14Q96SY0 518 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 GAL3ST1Q99999 423 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 CCDC77Q9BR77 488 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 NUP85Q9BW27 656 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 PPP1R3EQ9H7J1 279 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 GORASP2Q9H8Y8 452 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 MMP25Q9NPA2 562 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 RPRD1BQ9NQG5 326 aaKnown RBP4.61□□□□□ -1.67
CD44-220ENST00000525688 CENPMQ9NSP4 180 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 PAG1Q9NWQ8 432 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 PTGFRNQ9P2B2 879 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 ACSL5Q9ULC5 683 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 CLEC4AQ9UMR7 237 aa4.61□□□□□ -1.67
CD44-220ENST00000525688 TDRKHQ9Y2W6 561 aaKnown RBP4.61□□□□□ -1.67
CD44-220ENST00000525688 GOLGB1Q14789 3259 aaKnown RBP4.61□□□□□ -1.67
CD44-220ENST00000525688 NUP188Q5SRE5 1749 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 DOT1LQ8TEK3 1739 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 TOGARAM1Q9Y4F4 1720 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 BTAF1O14981 1849 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 LY6G6EA0A0G2JKS1 128 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 KANSL1LA0AUZ9 987 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 HTR3EA5X5Y0 456 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 ANXA2P2A6NMY6 339 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 KDM4EB2RXH2 506 aaPredicted RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 E9PBE3 544 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 SMAD9O15198 467 aaKnown RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 CASC3O15234 703 aaKnown RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 CACNG3O60359 315 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 AVILO75366 819 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 SLCO2B1O94956 709 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 VNN2O95498 520 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 TGFAP01135 160 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 LCATP04180 440 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 CCDC192P0DO97 292 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 CCND2P30279 289 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 CHRNA3P32297 505 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 PIGAP37287 484 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 PTGER3P43115 390 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 MAGEA8P43361 318 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 MMP13P45452 471 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 RAB28P51157 221 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 SUOXP51687 545 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 CLCNKAP51800 687 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 GPR143P51810 404 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 METAP1P53582 386 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 SPAG1Q07617 926 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 SREBF2Q12772 1141 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 IL24Q13007 206 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 TRAF1Q13077 416 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 PLD1Q13393 1074 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 GRAPQ13588 217 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 DOC2AQ14183 400 aa4.6□□□□□ -1.67
CD44-220ENST00000525688 CTTNQ14247 550 aaKnown RBP4.6□□□□□ -1.67
CD44-220ENST00000525688 GPR18Q14330 331 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms