RNA–Protein interactions for RNA: ENST00000521216.5

SKP1-208, Transcript of S-phase kinase associated protein 1, human

APPRIS ALT1 TSL 5 BASIC

Gene SKP1, Length 899 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SKP1-208	ENST00000521216	ERRFI1	Q9UJM3	462 aa	Predicted RBP	4.57	□□□□□ -1.68
SKP1-208	ENST00000521216	GRID1	Q9ULK0	1009 aa		4.57	□□□□□ -1.68
SKP1-208	ENST00000521216	CASTOR2	A6NHX0	329 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	EXTL3	O43909	919 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	SNX3	O60493	162 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	HSPA4L	O95757	839 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	IGLV1-44	P01699	117 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	PDGFRA	P16234	1089 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	ACAT1	P24752	427 aa	Known RBP	4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	CDC25C	P30307	473 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	HSD17B3	P37058	310 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	ALDH3A2	P51648	485 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	GSDMD	P57764	484 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	DLK1	P80370	383 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	TEAD2	Q15562	447 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	OR4A47	Q6IF82	309 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	PWWP2B	Q6NUJ5	590 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	SUSD1	Q6UWL2	747 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216		Q6ZSR9	355 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	C11orf57	Q6ZUT1	292 aa	Predicted RBP	4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	G2E3	Q7L622	706 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	KLHDC1	Q8N7A1	406 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	RASGEF1A	Q8N9B8	481 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	ADAD2	Q8NCV1	583 aa	Known RBP	4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	DBF4B	Q8NFT6	615 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	OR10Q1	Q8NGQ4	319 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	DYRK2	Q92630	601 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	ZMAT2	Q96NC0	199 aa	Known RBP	4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	EGFL8	Q99944	293 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	FERMT1	Q9BQL6	677 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	ATP13A3	Q9H7F0	1226 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	FGF22	Q9HCT0	170 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	ZCCHC17	Q9NP64	241 aa	Known RBP	4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	PPP2R2C	Q9Y2T4	447 aa		4.56	□□□□□ -1.68
SKP1-208	ENST00000521216	DISP3	Q9P2K9	1392 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	NR5A2	O00482	541 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	ZNF195	O14628	629 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	FPGT	O14772	594 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	TBCA	O75347	108 aa	Known RBP	4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	QDPR	P09417	244 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	ZNF26	P17031	533 aa	Predicted RBP	4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	PRKCI	P41743	596 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	CRKL	P46109	303 aa	Known RBP	4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	CAPZA1	P52907	286 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	RASGEF1B	Q0VAM2	473 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	ILF2	Q12905	390 aa	Known RBP	4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	TRAP1	Q12931	704 aa	Known RBP	4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	MRGPRG-AS1	Q2M3A8	158 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	ZFP69	Q49AA0	526 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	LACTB2	Q53H82	288 aa	Predicted RBP	4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	CTR9	Q6PD62	1173 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	PSRC1	Q6PGN9	363 aa	Predicted RBP	4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	NOTCH2NL	Q7Z3S9	236 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	SPATA21	Q7Z572	469 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	PTAR1	Q7Z6K3	402 aa	Predicted RBP	4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	VSIG1	Q86XK7	387 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	LACC1	Q8IV20	430 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	MARVELD2	Q8N4S9	558 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	SETD6	Q8TBK2	473 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	CENPT	Q96BT3	561 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	ART5	Q96L15	291 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	SPATA33	Q96N06	139 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	NECTIN4	Q96NY8	510 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	SPAG5	Q96R06	1193 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	MGME1	Q9BQP7	344 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	PITPNM3	Q9BZ71	974 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	ATAD3A	Q9NVI7	634 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	PYGO1	Q9Y3Y4	419 aa		4.55	□□□□□ -1.68
SKP1-208	ENST00000521216	TRAV24	A0A0B4J272	114 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216		A0A1W2PPW3	197 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	MEIOC	A2RUB1	952 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	ANXA2P2	A6NMY6	339 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	GLRA3	O75311	464 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	ZNF821	O75541	412 aa	Predicted RBP	4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	ATP6AP2	O75787	350 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	CDK2AP2	O75956	126 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	STAG3L1	P0CL83	205 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	PSMA3	P25788	255 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	ALDH1B1	P30837	517 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	BMX	P51813	675 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	MTCP1	P56278	107 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	TUBB2A	Q13885	445 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	CTU2	Q2VPK5	515 aa	Known RBP	4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	LRRC73	Q5JTD7	316 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	ADAMTSL4-AS1	Q5T5F5	129 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	UGT3A1	Q6NUS8	523 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	HOGA1	Q86XE5	327 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	THNSL1	Q8IYQ7	743 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	OR7A2P	Q8NGA2	310 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	OR2T6	Q8NHC8	308 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	NSMAF	Q92636	917 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	TSACC	Q96A04	125 aa	Predicted RBP	4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	PGM2	Q96G03	612 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	FUCA2	Q9BTY2	467 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	TUBB2B	Q9BVA1	445 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	PLCXD1	Q9NUJ7	323 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	C2orf42	Q9NWW7	574 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	CACNG5	Q9UF02	275 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	SNX7	Q9UNH6	387 aa		4.54	□□□□□ -1.68
SKP1-208	ENST00000521216	WDR37	Q9Y2I8	494 aa		4.54	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms