RNA–Protein interactions for RNA: ENST00000496574.6

PKD1-222, Transcript of polycystin 1, transient receptor potential channel interacting, human

TSL 5

Gene PKD1, Length 4,419 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PKD1-222	ENST00000496574	SH3BP2	P78314	561 aa		13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	RHAG	Q02094	409 aa		13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	SCARB2	Q14108	478 aa		13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	DUSP28	Q4G0W2	176 aa		13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	MARCH9	Q86YJ5	346 aa		13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	GEMIN6	Q8WXD5	167 aa	Known RBP	13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	ARNTL2	Q8WYA1	636 aa		13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	ZNF599	Q96NL3	588 aa		13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	YIPF2	Q9BWQ6	316 aa		13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	RACGAP1	Q9H0H5	632 aa		13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	TPT1P8	Q9HAU6	139 aa		13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	POPDC3	Q9HBV1	291 aa		13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	SDR39U1	Q9NRG7	319 aa	Predicted RBP	13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	MLX	Q9UH92	298 aa		13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	EVL	Q9UI08	416 aa	Predicted RBP	13.81	□□□□□ -0.2
PKD1-222	ENST00000496574	DCLK1	O15075	740 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	AQP9	O43315	295 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	CNTN5	O94779	1100 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	MATN4	O95460	622 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	BPIFB1	Q8TDL5	484 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	NSUN3	Q9H649	340 aa	Known RBP	13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	RIMKLB	Q9ULI2	386 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	LOC730098	B7Z3J9	87 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	KIAA0513	O60268	411 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	GDF5	P43026	501 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	MLLT6	P55198	1093 aa	Predicted RBP	13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	ADNP2	Q6IQ32	1131 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	MED27	Q6P2C8	311 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	OOSP2	Q86WS3	158 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	SLITRK4	Q8IW52	837 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	PYCR2	Q96C36	320 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	TSGA13	Q96PP4	275 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	SPG21	Q9NZD8	308 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	MYO18A	Q92614	2054 aa	Known RBP	13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	PLD2	O14939	933 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	GLUD1	P00367	558 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	AKR1A1	P14550	325 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	DGKE	P52429	567 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	CRB2	Q5IJ48	1285 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	NDNF	Q8TB73	568 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	SLC30A3	Q99726	388 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	SLC29A3	Q9BZD2	475 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	GPN2	Q9H9Y4	310 aa	Predicted RBP	13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	SMURF1	Q9HCE7	757 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	FNIP2	Q9P278	1114 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	TRPS1	Q9UHF7	1281 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	RNF11	Q9Y3C5	154 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	PCDHGB6	Q9Y5F9	930 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	RGPD8	O14715	1765 aa	Predicted RBP	13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	FAM47E-STBD1	D6RA91	191 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	TPST2	O60704	377 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	C8G	P07360	202 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	STOM	P27105	288 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	HOXD10	P28358	340 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	RPL4	P36578	427 aa	Known RBP	13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	NPRL3	Q12980	569 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	SEMA3A	Q14563	771 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	PRAMEF19	Q5SWL8	479 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	DESI1	Q6ICB0	168 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	CXCL17	Q6UXB2	119 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	ZNF367	Q7RTV3	350 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	PRSS48	Q7RTY5	328 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	CCDC32	Q9BV29	185 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	GTPBP2	Q9BX10	602 aa	Known RBP	13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	FAM83D	Q9H4H8	585 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	MS4A12	Q9NXJ0	267 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	VPS29	Q9UBQ0	182 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	RGS17	Q9UGC6	210 aa	Predicted RBP	13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	ABCG2	Q9UNQ0	655 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	CLCA3P	Q9Y6N3	262 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	NRXN3	Q9Y4C0	1643 aa		13.8	□□□□□ -0.2
PKD1-222	ENST00000496574	C4A	P0C0L4	1744 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	C4B	P0C0L5	1744 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	MANBA	O00462	879 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	COQ9	O75208	318 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	SPATA31D3	P0C874	917 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	CD52	P31358	61 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	CDH4	P55283	916 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	ADAM15	Q13444	863 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	FRG2	Q64ET8	278 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	ENPP6	Q6UWR7	440 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	DPY19L3	Q6ZPD9	716 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	SPATA31D4	Q6ZUB0	917 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	FRG2B	Q96QU4	278 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	SMIM30	A4D0T7	59 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	CHURC1-FNTB	B4DL54	471 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	ACSL4	O60488	711 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	KDM4B	O94953	1096 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	MAP2K3	P46734	347 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	TSPYL5	Q86VY4	417 aa	Predicted RBP	13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	ZFAND4	Q86XD8	727 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	AQP11	Q8NBQ7	271 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	SMG7	Q92540	1137 aa	Known RBP	13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	RPL10L	Q96L21	214 aa	Known RBP	13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	PKP4	Q99569	1192 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	ZSCAN5A	Q9BUG6	496 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	DPAGT1	Q9H3H5	408 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	MED11	Q9P086	117 aa		13.79	□□□□□ -0.2
PKD1-222	ENST00000496574	AKAP8	O43823	692 aa	Known RBP	13.79	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms