RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 HORMAD1Q86X24 394 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 TP53I13Q8NBR0 393 aaPredicted RBP11.8□□□□□ -0.52
HDAC6-230ENST00000488543 HBEGFQ99075 208 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 ITM2CQ9NQX7 267 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 RIC8BQ9NVN3 520 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 EGFL7Q9UHF1 273 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 SCML1Q9UN30 329 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 CYP8B1Q9UNU6 501 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 SAC3D1A6NKF1 404 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 NR5A2O00482 541 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 ZNF16P17020 682 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-230ENST00000488543 ATP6V1B2P21281 511 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 CALRP27797 417 aaKnown RBP11.79□□□□□ -0.52
HDAC6-230ENST00000488543 ZFP36L2P47974 494 aaKnown RBP11.79□□□□□ -0.52
HDAC6-230ENST00000488543 DGKEP52429 567 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 CLDN2P57739 230 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 PFN3P60673 137 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 CDK3Q00526 305 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 GTF2H3Q13889 308 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 KIF19Q2TAC6 998 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 C6orf10Q5SRN2 563 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 CRTC3Q6UUV7 619 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 KLHDC8AQ8IYD2 350 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 CFAP206Q8IYR0 622 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 MIER2Q8N344 545 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 PYCR2Q96C36 320 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 SLC29A3Q9BZD2 475 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 POLMQ9NP87 494 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-230ENST00000488543 SLC52A3Q9NQ40 469 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 PFDN4Q9NQP4 134 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 FARSBQ9NSD9 589 aaKnown RBP11.79□□□□□ -0.52
HDAC6-230ENST00000488543 FZD4Q9ULV1 537 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 RAB26Q9ULW5 256 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 GPR34Q9UPC5 381 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 MRPS17Q9Y2R5 130 aaKnown RBP11.79□□□□□ -0.52
HDAC6-230ENST00000488543 AP4S1Q9Y587 144 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 COMMD3-BMI1R4GMX3 469 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 POM121BA6NF01 834 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 CHURC1-FNTBB4DL54 471 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 H0Y8X5 98 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 MANBAO00462 879 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 FFAR3O14843 346 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 LSM1O15116 133 aaKnown RBP11.79□□□□□ -0.52
HDAC6-230ENST00000488543 GPR42O15529 346 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 POP7O75817 140 aaKnown RBP11.79□□□□□ -0.52
HDAC6-230ENST00000488543 FUCA1P04066 466 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 FAM58BPP0C7Q3 252 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 IDO1P14902 403 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 RPL5P46777 297 aaKnown RBP11.79□□□□□ -0.52
HDAC6-230ENST00000488543 RPS6KA3P51812 740 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 ERVK-8P63133 956 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 TRIM25Q14258 630 aaKnown RBP11.79□□□□□ -0.52
HDAC6-230ENST00000488543 PLA2G4EQ3MJ16 856 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 ZFP1Q6P2D0 407 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 FAM83HQ6ZRV2 1179 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-230ENST00000488543 ADCY4Q8NFM4 1077 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 USP7Q93009 1102 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 PPWD1Q96BP3 646 aaKnown RBP11.79□□□□□ -0.52
HDAC6-230ENST00000488543 SHDQ96IW2 340 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 ZNF514Q96K75 400 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-230ENST00000488543 SLC25A23Q9BV35 468 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 BRINP2Q9C0B6 783 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 BTBD1Q9H0C5 482 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 ATG10Q9H0Y0 220 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 TM7SF3Q9NS93 570 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 STOX2Q9P2F5 926 aaPredicted RBP11.79□□□□□ -0.52
HDAC6-230ENST00000488543 INVSQ9Y283 1065 aa11.79□□□□□ -0.52
HDAC6-230ENST00000488543 NCOR1O75376 2440 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 BDP1A6H8Y1 2624 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 C17orf113A0A1B0GUU1 675 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 PDLIM1O00151 329 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 SCAMP1O15126 338 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 CLDN9O95484 217 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 PDGFBP01127 241 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-230ENST00000488543 CATP04040 527 aaKnown RBP11.78□□□□□ -0.52
HDAC6-230ENST00000488543 ITPKAP23677 461 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 GRIA3P42263 894 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 STX5Q13190 355 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 LRRC32Q14392 662 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 GGTA1PQ4G0N0 100 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 GJD3Q8N144 294 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 TSTD1Q8NFU3 115 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 OR2L2Q8NH16 312 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 ASB9Q96DX5 294 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 TEX37Q96LM6 180 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 PKP4Q99569 1192 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 C1orf50Q9BV19 199 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 TEX101Q9BY14 249 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 C6orf106Q9H6K1 298 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-230ENST00000488543 CAAP1Q9H8G2 361 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 VCX3AQ9NNX9 186 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 DNAJC11Q9NVH1 559 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 KLQ9UEF7 1012 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 SLC22A14Q9Y267 594 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 H3BM21 787 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 SOCS2O14508 198 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 NRP2O60462 931 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 C1orf105O95561 183 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 GNAO1P09471 354 aa11.78□□□□□ -0.52
HDAC6-230ENST00000488543 C7P10643 843 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms