RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 TCTN3Q6NUS6 607 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 LETMD1Q6P1Q0 360 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 BRAT1Q6PJG6 821 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 FOXR2Q6PJQ5 311 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 CEACAM20Q6UY09 585 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 ARHGAP36Q6ZRI8 547 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 C22orf34Q6ZV56 151 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 NCCRP1Q6ZVX7 275 aaPredicted RBP6.65□□□□□ -1.34
HDAC3-209ENST00000486618 C17orf82Q86X59 251 aaPredicted RBP6.65□□□□□ -1.34
HDAC3-209ENST00000486618 FAM129CQ86XR2 697 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 GRAMD2AQ8IUY3 354 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 TRIM59Q8IWR1 403 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 ATG16L2Q8NAA4 619 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 TMEM35BQ8NCS4 154 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 KIF18AQ8NI77 898 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 CREB3L4Q8TEY5 395 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 SSC4DQ8WTU2 575 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 CHTF18Q8WVB6 975 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 FUBP1Q96AE4 644 aaKnown RBP6.65□□□□□ -1.34
HDAC3-209ENST00000486618 ZNF653Q96CK0 615 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 C18orf8Q96DM3 657 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 GBP5Q96PP8 586 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 TRIM2Q9C040 744 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 PAIP1Q9H074 479 aaKnown RBP6.65□□□□□ -1.34
HDAC3-209ENST00000486618 GOLPH3LQ9H4A5 285 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 GORASP2Q9H8Y8 452 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 FGF22Q9HCT0 170 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 TMEM248Q9NWD8 314 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 OR12D3Q9UGF7 316 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 DNAI1Q9UI46 699 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 PILRAQ9UKJ1 303 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 TP53TG5Q9Y2B4 290 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 PCDHGA9Q9Y5G4 932 aaKnown RBP6.65□□□□□ -1.34
HDAC3-209ENST00000486618 PCDHGA6Q9Y5G7 932 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 ATP23Q9Y6H3 246 aa6.65□□□□□ -1.34
HDAC3-209ENST00000486618 UTP20O75691 2785 aaKnown RBP6.65□□□□□ -1.35
HDAC3-209ENST00000486618 BSNQ9UPA5 3926 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 LOC101059948A0A1B0GTJ6 334 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 TSPAN11A1L157 253 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 PRSS38A1L453 326 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 CCDC151A5D8V7 595 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 BECN2A8MW95 431 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 HSBP1L1C9JCN9 74 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 E7EVH7 732 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 PGRMC2O15173 223 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 DUX1O43812 170 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 CRTAPO75718 401 aaPredicted RBP6.64□□□□□ -1.35
HDAC3-209ENST00000486618 RECQL5O94762 991 aaPredicted RBP6.64□□□□□ -1.35
HDAC3-209ENST00000486618 OR5F1O95221 314 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 FKBP9O95302 570 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 DDAH2O95865 285 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 FGF1P05230 155 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 THRAP10827 490 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 PRG2P13727 222 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 ADRA1BP35368 520 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 PPARGP37231 505 aaPredicted RBP6.64□□□□□ -1.35
HDAC3-209ENST00000486618 GABRB2P47870 512 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 FNTAP49354 379 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 GBX2P52951 348 aaPredicted RBP6.64□□□□□ -1.35
HDAC3-209ENST00000486618 ITGA8P53708 1063 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 MAZP56270 477 aaKnown RBP6.64□□□□□ -1.35
HDAC3-209ENST00000486618 SUMO1P63165 101 aaKnown RBP6.64□□□□□ -1.35
HDAC3-209ENST00000486618 TUBA4AP68366 448 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 PKP1Q13835 747 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 TPD52L1Q16890 204 aaPredicted RBP6.64□□□□□ -1.35
HDAC3-209ENST00000486618 ANKS6Q68DC2 871 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 ACAD10Q6JQN1 1059 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 TMEM71Q6P5X7 295 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 ERICH5Q6P6B1 374 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 AAGABQ6PD74 315 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 TRIM65Q6PJ69 517 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 CLEC2AQ6UVW9 174 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 GK5Q6ZS86 529 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 ASB18Q6ZVZ8 466 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 FKBP9P1Q75LS8 142 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 NANOGNBQ7Z5D8 188 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 TSPYL5Q86VY4 417 aaPredicted RBP6.64□□□□□ -1.35
HDAC3-209ENST00000486618 FAM131BQ86XD5 332 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 DNAAF5Q86Y56 855 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 CPOQ8IVL8 374 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 SFTPA2Q8IWL1 248 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 MFSD4AQ8N468 514 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 POU5F2Q8N7G0 328 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 DNAAF3Q8N9W5 541 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 PLA2G15Q8NCC3 412 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 CCL4L1Q8NHW4 92 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 STARD8Q92502 1023 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 DIO2Q92813 273 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 VOPP1Q96AW1 172 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 ZNF641Q96N77 438 aaPredicted RBP6.64□□□□□ -1.35
HDAC3-209ENST00000486618 SMC6Q96SB8 1091 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 MNTQ99583 582 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 FUT8Q9BYC5 575 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 WDR26Q9H7D7 661 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 ZMAT3Q9HA38 289 aaKnown RBP6.64□□□□□ -1.35
HDAC3-209ENST00000486618 CARS2Q9HA77 564 aaKnown RBP6.64□□□□□ -1.35
HDAC3-209ENST00000486618 MRPL40Q9NQ50 206 aaKnown RBP6.64□□□□□ -1.35
HDAC3-209ENST00000486618 TRNAU1APQ9NX07 287 aaKnown RBP6.64□□□□□ -1.35
HDAC3-209ENST00000486618 OCIAD1Q9NX40 245 aa6.64□□□□□ -1.35
HDAC3-209ENST00000486618 APEX2Q9UBZ4 518 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms