RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 FOXN4Q96NZ1 517 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 GPATCH1Q9BRR8 931 aaKnown RBP3.24□□□□□ -1.89
VPS41-213ENST00000485955 PPANQ9NQ55 473 aaKnown RBP3.24□□□□□ -1.89
VPS41-213ENST00000485955 CCDC177Q9NQR7 707 aaPredicted RBP3.24□□□□□ -1.89
VPS41-213ENST00000485955 PRMT7Q9NVM4 692 aaPredicted RBP3.24□□□□□ -1.89
VPS41-213ENST00000485955 ABT1Q9ULW3 272 aaKnown RBP3.24□□□□□ -1.89
VPS41-213ENST00000485955 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.24□□□□□ -1.89
VPS41-213ENST00000485955 GPR34Q9UPC5 381 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 ADAMTSL3P82987 1691 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 KIF21BO75037 1637 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 STRCQ7RTU9 1775 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 IGHV3OR16-10A0A075B7F0 116 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 A0A1W2PPR1 153 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 SH3BP5O60239 455 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 PGM3O95394 542 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 TRUB2O95900 331 aaKnown RBP3.23□□□□□ -1.89
VPS41-213ENST00000485955 SLC2A2P11168 524 aaPredicted RBP3.23□□□□□ -1.89
VPS41-213ENST00000485955 PFKFB1P16118 471 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 PTMSP20962 102 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 EIF2DP41214 584 aaKnown RBP3.23□□□□□ -1.89
VPS41-213ENST00000485955 MATR3P43243 847 aaKnown RBP eCLIP3.23□□□□□ -1.89
VPS41-213ENST00000485955 MAPK12P53778 367 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 CUL4AQ13619 759 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 RAPSNQ13702 412 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 BAATQ14032 418 aaPredicted RBP3.23□□□□□ -1.89
VPS41-213ENST00000485955 EXT1Q16394 746 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 SNAPC1Q16533 368 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 LCN1P1Q5VSP4 162 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 ZNF774Q6NX45 483 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 FAM198BQ6UWH4 519 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 G2E3Q7L622 706 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 MMD2Q8IY49 270 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 Q8NBF4 154 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 OR6S1Q8NH40 331 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 C11orf45Q8TAV5 145 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 PTERQ96BW5 349 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 THOC1Q96FV9 657 aaKnown RBP3.23□□□□□ -1.89
VPS41-213ENST00000485955 PRICKLE1Q96MT3 831 aaPredicted RBP3.23□□□□□ -1.89
VPS41-213ENST00000485955 SOSTQ9BQB4 213 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 PEG3Q9GZU2 1588 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 MAF1Q9H063 256 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 TLE6Q9H808 572 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 TRPV4Q9HBA0 871 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 ZNF318Q5VUA4 2279 aa3.23□□□□□ -1.89
VPS41-213ENST00000485955 FANCD2Q9BXW9 1451 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 A0A1W2PPM1 405 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 ANKRD18BA2A2Z9 1011 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 NEMP2A6NFY4 417 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 SNURFLB1AK76 121 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 FPGTO14772 594 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 BEST1O76090 585 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 ACTN2P35609 894 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 LBX1P52954 281 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 XGP55808 180 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 CYCSP99999 105 aaKnown RBP3.22□□□□□ -1.89
VPS41-213ENST00000485955 STK4Q13043 487 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 FASTKD3Q14CZ7 662 aaKnown RBP3.22□□□□□ -1.89
VPS41-213ENST00000485955 ZNF74Q16587 644 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 MOGAT2Q3SYC2 334 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 LCE3EQ5T5B0 92 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 MFSD12Q6NUT3 480 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 LGI2Q8N0V4 545 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 MAPK15Q8TD08 544 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 ZNF830Q96NB3 372 aaPredicted RBP3.22□□□□□ -1.89
VPS41-213ENST00000485955 ABHD1Q96SE0 405 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 MXD3Q9BW11 206 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.22□□□□□ -1.89
VPS41-213ENST00000485955 SLC7A10Q9NS82 523 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.22□□□□□ -1.89
VPS41-213ENST00000485955 HAO2Q9NYQ3 351 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 MRPL15Q9P015 296 aaKnown RBP3.22□□□□□ -1.89
VPS41-213ENST00000485955 MUTYHQ9UIF7 546 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 LTBP4Q8N2S1 1624 aa3.22□□□□□ -1.89
VPS41-213ENST00000485955 AQRO60306 1485 aaKnown RBP eCLIP3.22□□□□□ -1.89
VPS41-213ENST00000485955 MAPKBP1O60336 1514 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 A0A1W2PPQ1 181 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 PI4K2BG5E9Z4 385 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 WDHD1O75717 1129 aaPredicted RBP3.21□□□□□ -1.9
VPS41-213ENST00000485955 C22orf31O95567 290 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 IGHEP01854 428 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 CCR10P46092 362 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 EIF5P55010 431 aaKnown RBP3.21□□□□□ -1.9
VPS41-213ENST00000485955 MS4A2Q01362 244 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 VEZF1Q14119 521 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 MCMDC2Q4G0Z9 681 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 LYSMD4Q5XG99 296 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 CATSPERDQ86XM0 798 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 CDC20BQ86Y33 519 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 ERC1Q8IUD2 1116 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 CNPY4Q8N129 248 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 NUP37Q8NFH4 326 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 MIPOL1Q8TD10 442 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 JAKMIP2Q96AA8 810 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 FAM218AQ96MZ4 157 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 GCNAQ96QF7 691 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 SPAG5Q96R06 1193 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 OLAHQ9NV23 265 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 RNF150Q9ULK6 438 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 CSNK1G3Q9Y6M4 447 aa3.21□□□□□ -1.9
VPS41-213ENST00000485955 ZCCHC6Q5VYS8 1495 aaKnown RBP3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms