RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, human

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPHP4-208	ENST00000478423	CD70	P32970	193 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	BMPR1A	P36894	532 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	VIPR2	P41587	438 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	SLC13A2	Q13183	592 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	PKDCC	Q504Y2	493 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	TCEAL8	Q8IYN2	117 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	RGMA	Q96B86	450 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	COL21A1	Q96P44	957 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	ZIC5	Q96T25	663 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	DNAAF2	Q9NVR5	837 aa	Known RBP	13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	ACTR3B	Q9P1U1	418 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	HCST	Q9UBK5	93 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	BTBD3	Q9Y2F9	522 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	DDX60	Q8IY21	1712 aa	Known RBP	13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	AURKA	O14965	403 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	B3GALT2	O43825	422 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	LATS1	O95835	1130 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	NR4A1	P22736	598 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	ROR2	Q01974	943 aa	Known RBP	13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	PTGR1	Q14914	329 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	UNC50	Q53HI1	259 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	ERN2	Q76MJ5	926 aa	Known RBP	13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	DCUN1D3	Q8IWE4	304 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	KCT2	Q8NC54	265 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	TRPV3	Q8NET8	790 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	C1GALT1C1	Q96EU7	318 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	CMTM7	Q96FZ5	175 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	LRIG1	Q96JA1	1093 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	CEP295NL	Q96MC4	621 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	SLC35A5	Q9BS91	424 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	SSR3	Q9UNL2	185 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	TMED5	Q9Y3A6	229 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	TSC22D4	Q9Y3Q8	395 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	KMO	O15229	486 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	PRSS56	P0CW18	603 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	MPI	P34949	423 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	NCBP2	P52298	156 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	LGALS3BP	Q08380	585 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	ELAVL3	Q14576	367 aa	Known RBP	13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	PLEKHS1	Q5SXH7	462 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	FAAH2	Q6GMR7	532 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	FAM92B	Q6ZTR7	304 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	ZZZ3	Q8IYH5	903 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	OR9A1P	Q8NGU1	263 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	HM13	Q8TCT9	377 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	CXorf21	Q9HAI6	301 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	AMBN	Q9NP70	447 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	CRNN	Q9UBG3	495 aa	Predicted RBP	13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	PHF24	Q9UPV7	400 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423		H3BNX3	289 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	AP2A2	O94973	939 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	RPS13	P62277	151 aa	Known RBP	13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	YIPF4	Q9BSR8	244 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	ZNF624	Q9P2J8	865 aa	Predicted RBP	13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	MRTO4	Q9UKD2	239 aa	Known RBP	13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	PDE10A	Q9Y233	779 aa		13.84	□□□□□ -0.19
NPHP4-208	ENST00000478423	CCNB2	O95067	398 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	IFNG	P01579	166 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	COX10	Q12887	443 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	DHCR24	Q15392	516 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	ALG11	Q2TAA5	492 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	ZNF789	Q5FWF6	425 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	PEX5L	Q8IYB4	626 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	COX18	Q8N8Q8	333 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	FAM98A	Q8NCA5	519 aa	Known RBP	13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	PSMA8	Q8TAA3	256 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	TPT1P8	Q9HAU6	139 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	SPATA7	Q9P0W8	599 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	PGAP2	Q9UHJ9	254 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	TTC34	A8MYJ7	566 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	AHCYL1	O43865	530 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	CDH1	P12830	882 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	CST5	P28325	142 aa	Predicted RBP	13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	CLCN4	P51793	760 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	RAB8A	P61006	207 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	MERTK	Q12866	999 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	DAG1	Q14118	895 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	CROCCP3	Q8IVE0	287 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	OR4E2	Q8NGC2	313 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	SLC5A11	Q8WWX8	675 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	PKP2	Q99959	881 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	SPRTN	Q9H040	489 aa	Predicted RBP	13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	USP3	Q9Y6I4	520 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	PRSS51	A0A1B0GVH4	220 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	HEPACAM2	A8MVW5	462 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	CRISP3	P54108	245 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	TAS2R50	P59544	299 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	GRB7	Q14451	532 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	TAF13	Q15543	124 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	FAM220A	Q7Z4H9	259 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	TICAM1	Q8IUC6	712 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	OR10Q1	Q8NGQ4	319 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	KXD1	Q9BQD3	176 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423	SPO11	Q9Y5K1	396 aa		13.83	□□□□□ -0.2
NPHP4-208	ENST00000478423		M0QX08	132 aa		13.82	□□□□□ -0.2
NPHP4-208	ENST00000478423	NDUFS4	O43181	175 aa		13.82	□□□□□ -0.2
NPHP4-208	ENST00000478423	TMCC2	O75069	709 aa		13.82	□□□□□ -0.2
NPHP4-208	ENST00000478423	DEFB103A	P81534	67 aa		13.82	□□□□□ -0.2
NPHP4-208	ENST00000478423	FOXM1	Q08050	763 aa		13.82	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms