RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 KCND3Q9UK17 655 aa14.96□□□□□ -0.01
HMGA1-206ENST00000478214 IKZF3Q9UKT9 509 aa14.96□□□□□ -0.01
HMGA1-206ENST00000478214 PCDHGA6Q9Y5G7 932 aa14.96□□□□□ -0.01
HMGA1-206ENST00000478214 AP1M2Q9Y6Q5 423 aa14.96□□□□□ -0.01
HMGA1-206ENST00000478214 IGKV1-8A0A0C4DH67 115 aa14.95□□□□□ -0.02
HMGA1-206ENST00000478214 OR2A25A4D2G3 310 aa14.95□□□□□ -0.02
HMGA1-206ENST00000478214 ZNF37AP17032 561 aaPredicted RBP14.95□□□□□ -0.02
HMGA1-206ENST00000478214 RPS18P62269 152 aaKnown RBP14.95□□□□□ -0.02
HMGA1-206ENST00000478214 MC1RQ01726 317 aa14.95□□□□□ -0.02
HMGA1-206ENST00000478214 PRDX1Q06830 199 aaKnown RBP14.95□□□□□ -0.02
HMGA1-206ENST00000478214 CDC20Q12834 499 aa14.95□□□□□ -0.02
HMGA1-206ENST00000478214 KBTBD12Q3ZCT8 623 aa14.95□□□□□ -0.02
HMGA1-206ENST00000478214 C1orf189Q5VU69 101 aa14.95□□□□□ -0.02
HMGA1-206ENST00000478214 ICE2Q659A1 982 aa14.95□□□□□ -0.02
HMGA1-206ENST00000478214 CEP97Q8IW35 865 aa14.95□□□□□ -0.02
HMGA1-206ENST00000478214 PPM1NQ8N819 430 aa14.95□□□□□ -0.02
HMGA1-206ENST00000478214 FBF1Q8TES7 1133 aa14.95□□□□□ -0.02
HMGA1-206ENST00000478214 PDLIM5Q96HC4 596 aaKnown RBP14.95□□□□□ -0.02
HMGA1-206ENST00000478214 CPNE1Q99829 537 aa14.95□□□□□ -0.02
HMGA1-206ENST00000478214 ACTL8Q9H568 366 aa14.95□□□□□ -0.02
HMGA1-206ENST00000478214 STARD5Q9NSY2 213 aa14.95□□□□□ -0.02
HMGA1-206ENST00000478214 DHCR7Q9UBM7 475 aaKnown RBP14.95□□□□□ -0.02
HMGA1-206ENST00000478214 SEC16AO15027 2179 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 PIEZO2Q9H5I5 2752 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 A0A0J9YVX5 310 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 CCNDBP1O95273 360 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 ITGB2P05107 769 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 CAPN1P07384 714 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 HBQ1P09105 142 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 ATXN8OSP0DMR3 200 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 STX2P32856 288 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 GP5P40197 560 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 TBPL1P62380 186 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 RPS15P62841 145 aaKnown RBP14.94□□□□□ -0.02
HMGA1-206ENST00000478214 ERV3-1Q14264 604 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 EFTUD2Q15029 972 aaKnown RBP eCLIP14.94□□□□□ -0.024e-21■■■■■ 30.7
HMGA1-206ENST00000478214 LINC00303Q3SY05 128 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 GLE1Q53GS7 698 aaKnown RBP14.94□□□□□ -0.02
HMGA1-206ENST00000478214 THEMIS2Q5TEJ8 643 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 ZNF385CQ66K41 422 aaPredicted RBP14.94□□□□□ -0.02
HMGA1-206ENST00000478214 FRMPD2BQ6IN97 320 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 RHBDD2Q6NTF9 364 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 FBXO42Q6P3S6 717 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 TLDC1Q6P9B6 456 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 AGTRAPQ6RW13 159 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 FAM198BQ6UWH4 519 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 RNF44Q7L0R7 432 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 PAQR7Q86WK9 346 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 CEP112Q8N8E3 955 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 ANKRD49Q8WVL7 239 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 IFT81Q8WYA0 676 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 SLC39A7Q92504 469 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 ZNF285Q96NJ3 590 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 RBBP8Q99708 897 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 SELENOSQ9BQE4 189 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 PLCD4Q9BRC7 762 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 NDC1Q9BTX1 674 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 GPR87Q9BY21 358 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 ATG10Q9H0Y0 220 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 CAB39LQ9H9S4 337 aa14.94□□□□□ -0.02
HMGA1-206ENST00000478214 CCDC177Q9NQR7 707 aaPredicted RBP14.94□□□□□ -0.02
HMGA1-206ENST00000478214 FARSAQ9Y285 508 aaKnown RBP14.94□□□□□ -0.02
HMGA1-206ENST00000478214 LOC105369274A0A096LPK9 316 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 LOC102723532A0A0G2JNH3 316 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 CDC7O00311 574 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 CREG1O75629 220 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 FAM155BO75949 473 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 FURINP09958 794 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 HIST1H2AGP0C0S8 130 aaPredicted RBP14.93□□□□□ -0.02
HMGA1-206ENST00000478214 HIST1H2ADP20671 130 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 PTPN4P29074 926 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 GCGRP47871 477 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 SLC12A2P55011 1212 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 VSX2P58304 361 aaPredicted RBP14.93□□□□□ -0.02
HMGA1-206ENST00000478214 ABATP80404 500 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 NFKB2Q00653 900 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 POU4F1Q01851 419 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 ILF2Q12905 390 aaKnown RBP14.93□□□□□ -0.02
HMGA1-206ENST00000478214 NAE1Q13564 534 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 LY6DQ14210 128 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 USP10Q14694 798 aaKnown RBP14.93□□□□□ -0.02
HMGA1-206ENST00000478214 NAA25Q14CX7 972 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 CRTC2Q53ET0 693 aaPredicted RBP14.93□□□□□ -0.02
HMGA1-206ENST00000478214 UBAP2Q5T6F2 1119 aaKnown RBP14.93□□□□□ -0.02
HMGA1-206ENST00000478214 FAM69BQ5VUD6 431 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 ZNF425Q6IV72 752 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 SBSNQ6UWP8 590 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 OR4N4Q8N0Y3 316 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 NKAPQ8N5F7 415 aaKnown RBP14.93□□□□□ -0.02
HMGA1-206ENST00000478214 ENDOVQ8N8Q3 282 aaKnown RBP14.93□□□□□ -0.02
HMGA1-206ENST00000478214 LSM14AQ8ND56 463 aaKnown RBP14.93□□□□□ -0.02
HMGA1-206ENST00000478214 MED8Q96G25 268 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 WBP1Q96G27 269 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 HIST1H2AHQ96KK5 128 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 GBP5Q96PP8 586 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 GPR22Q99680 433 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 HIST1H2AJQ99878 128 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 H2AFJQ9BTM1 129 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 GPAMQ9HCL2 828 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 TXLNGQ9NUQ3 528 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms