RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 FAM157CP0CG43 387 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 PDGFRAP16234 1089 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 PSMA3P25788 255 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 CD27P26842 260 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 HSD17B3P37058 310 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 NKX2-1P43699 371 aaPredicted RBP4.41□□□□□ -1.7
PTCD3-211ENST00000476215 VAMP7P51809 220 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 NR0B1P51843 470 aaKnown RBP4.41□□□□□ -1.7
PTCD3-211ENST00000476215 CAPZA1P52907 286 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 CRIP2P52943 208 aaPredicted RBP4.41□□□□□ -1.7
PTCD3-211ENST00000476215 SP3Q02447 781 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 SPECC1Q5M775 1068 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 C6orf136Q5SQH8 315 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 OR4A47Q6IF82 309 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 TRAT1Q6PIZ9 186 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 KIRREL3Q8IZU9 778 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 RASGEF1AQ8N9B8 481 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 NOA1Q8NC60 698 aaKnown RBP4.41□□□□□ -1.7
PTCD3-211ENST00000476215 PRAC1Q96KF2 57 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 SPATA33Q96N06 139 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 LITAFQ99732 161 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 CHST11Q9NPF2 352 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 PPANQ9NQ55 473 aaKnown RBP4.41□□□□□ -1.7
PTCD3-211ENST00000476215 GSN-AS1Q9NRJ2 163 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 CHCHD3Q9NX63 227 aaKnown RBP4.41□□□□□ -1.7
PTCD3-211ENST00000476215 GRID1Q9ULK0 1009 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 SNX7Q9UNH6 387 aa4.41□□□□□ -1.7
PTCD3-211ENST00000476215 IGHV4-4A0A075B6R2 117 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 TRAV24A0A0B4J272 114 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 PSMD14O00487 310 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 EPHB6O15197 1021 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 EDIL3O43854 480 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 ZG16O60844 167 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 ATP6AP2O75787 350 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 AP2A2O94973 939 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 GP5P40197 560 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 CRKLP46109 303 aaKnown RBP4.4□□□□□ -1.71
PTCD3-211ENST00000476215 GSDMDP57764 484 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 NONOQ15233 471 aaKnown RBP eCLIP4.4□□□□□ -1.71
PTCD3-211ENST00000476215 TMEM30BQ3MIR4 351 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 LACTB2Q53H82 288 aaPredicted RBP4.4□□□□□ -1.71
PTCD3-211ENST00000476215 LCN1P1Q5VSP4 162 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 ARMC3Q5W041 872 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 SHQ1Q6PI26 577 aaKnown RBP4.4□□□□□ -1.71
PTCD3-211ENST00000476215 ABI3BPQ7Z7G0 1075 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 METTL23Q86XA0 190 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 MARVELD2Q8N4S9 558 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 NIPA2Q8N8Q9 360 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 DDHD1Q8NEL9 900 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 DYRK2Q92630 601 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 SPATA17Q96L03 361 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 C2orf42Q9NWW7 574 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 KCNK7Q9Y2U2 307 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 CFTRP13569 1480 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 MRC2Q9UBG0 1479 aa4.4□□□□□ -1.71
PTCD3-211ENST00000476215 THOC2Q8NI27 1593 aaKnown RBP4.4□□□□□ -1.71
PTCD3-211ENST00000476215 KIF26BQ2KJY2 2108 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 FANCD2Q9BXW9 1451 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 GLRA3O75311 464 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 PAK4O96013 591 aaPredicted RBP4.39□□□□□ -1.71
PTCD3-211ENST00000476215 RAF1P04049 648 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 SCG2P13521 617 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 TCF4P15884 667 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 IFNAR1P17181 557 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 LHCGRP22888 699 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 PRKCIP41743 596 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 LBX1P52954 281 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 MTCP1P56278 107 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 CLDN15P56746 228 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 PPARDQ03181 441 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 RASGEF1BQ0VAM2 473 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 ILF2Q12905 390 aaKnown RBP4.39□□□□□ -1.71
PTCD3-211ENST00000476215 TRAP1Q12931 704 aaKnown RBP4.39□□□□□ -1.71
PTCD3-211ENST00000476215 TEAD2Q15562 447 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 CTU2Q2VPK5 515 aaKnown RBP4.39□□□□□ -1.71
PTCD3-211ENST00000476215 PDLIM3Q53GG5 364 aaPredicted RBP4.39□□□□□ -1.71
PTCD3-211ENST00000476215 LRRC73Q5JTD7 316 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 CAVIN1Q6NZI2 390 aaKnown RBP4.39□□□□□ -1.71
PTCD3-211ENST00000476215 MOXD1Q6UVY6 613 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 TMEM207Q6UWW9 146 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 G2E3Q7L622 706 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 SPATA21Q7Z572 469 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 DNAJB7Q7Z6W7 309 aaPredicted RBP4.39□□□□□ -1.71
PTCD3-211ENST00000476215 KLHDC1Q8N7A1 406 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 ZNF248Q8NDW4 579 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 NSMAFQ92636 917 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 RBM4Q9BWF3 364 aaKnown RBP4.39□□□□□ -1.71
PTCD3-211ENST00000476215 PITPNM3Q9BZ71 974 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 BARHL1Q9BZE3 327 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 MTMR12Q9C0I1 747 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 FAM49AQ9H0Q0 323 aaPredicted RBP4.39□□□□□ -1.71
PTCD3-211ENST00000476215 SNX25Q9H3E2 840 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 OR6C2Q9NZP2 312 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 C19orf25Q9UFG5 118 aaPredicted RBP4.39□□□□□ -1.71
PTCD3-211ENST00000476215 CHKBQ9Y259 395 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 MRPS28Q9Y2Q9 187 aaKnown RBP4.39□□□□□ -1.71
PTCD3-211ENST00000476215 R4GN57 208 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 DISP3Q9P2K9 1392 aa4.39□□□□□ -1.71
PTCD3-211ENST00000476215 KIF21AQ7Z4S6 1674 aa4.38□□□□□ -1.71
PTCD3-211ENST00000476215 CCDC88BA6NC98 1476 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms