RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 IRAK4Q9NWZ3 460 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SYBUQ9NX95 663 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SPATA7Q9P0W8 599 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 RUVBL2Q9Y230 463 aaKnown RBP11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MED16Q9Y2X0 877 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 COPG1Q9Y678 874 aaKnown RBP11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MYO9AB2RTY4 2548 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 LRBAP50851 2863 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MYO7BQ6PIF6 2116 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ARHGEF33A8MVX0 844 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MYO1CO00159 1063 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 NIPSNAP2O75323 286 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ALOX12BO75342 701 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CLDN1O95832 211 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 FGGP02679 453 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ESR1P03372 595 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 FMO4P31512 558 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 EIF3BP55884 814 aaKnown RBP11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 KLC1Q07866 573 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 KCNJ11Q14654 390 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ARHGAP19Q14CB8 494 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 HIF1AQ16665 826 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 AGAP7PQ5VUJ5 663 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 KIAA0930Q6ICG6 404 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ZNF425Q6IV72 752 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PRMT9Q6P2P2 845 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CES3Q6UWW8 571 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CENPUQ71F23 418 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CAND1Q86VP6 1230 aaKnown RBP11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 KCNMB4Q86W47 210 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CILP2Q8IUL8 1156 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 LRRC56Q8IYG6 542 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PRELID2Q8N945 189 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 TTC29Q8NA56 475 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 OR9A1PQ8NGU1 263 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 STT3BQ8TCJ2 826 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MAGEC3Q8TD91 643 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 COG1Q8WTW3 980 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PSMF1Q92530 271 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 C10orf90Q96M02 699 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 AGAP4Q96P64 663 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MIPEPQ99797 713 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 WDR77Q9BQA1 342 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PLCD4Q9BRC7 762 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 LHPPQ9H008 270 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SOX17Q9H6I2 414 aaPredicted RBP11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ZNF304Q9HCX3 659 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ZC3H7BQ9UGR2 993 aaKnown RBP11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CDC23Q9UJX2 597 aa11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 NOVA2Q9UNW9 492 aaKnown RBP11.69□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CPAMD8Q8IZJ3 1885 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 A0A0J9YVX5 310 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ANKUB1A6NFN9 424 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 GOLGA8KD6RF30 607 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 H0YGG7 62 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 H3BMM5 538 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 GOLGA8TH3BQL2 631 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 E2F3O00716 465 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 AVILO75366 819 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 KLHL18O94889 574 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ZGLP1P0C6A0 271 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ATXN8OSP0DMR3 200 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 OGNP20774 298 aaKnown RBP11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ITGA3P26006 1051 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 TSFMP43897 325 aaKnown RBP11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CLCN7P51798 805 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ARF3P61204 181 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 BASP1P80723 227 aaKnown RBP11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PRDX1Q06830 199 aaKnown RBP11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 KCTD19Q17RG1 926 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 TUBB8Q3ZCM7 444 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ACSBG2Q5FVE4 666 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 RNF187Q5TA31 235 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MRNIPQ6NTE8 343 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CNSTQ6PJW8 725 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CYHR1Q6ZMK1 362 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SHISA6Q6ZSJ9 500 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 NEK10Q6ZWH5 1172 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SDCCAG8Q86SQ7 713 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 LAPTM4BQ86VI4 370 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PAQR7Q86WK9 346 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 FBXO15Q8NCQ5 510 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ST6GALNAC3Q8NDV1 305 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MAIP1Q8WWC4 291 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 FOPNLQ96NB1 174 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 OR2A5Q96R48 311 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 LMF1Q96S06 567 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ZFYVE21Q9BQ24 234 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 TRIM56Q9BRZ2 755 aaKnown RBP11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 DPH7Q9BTV6 452 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ILKAPQ9H0C8 392 aaPredicted RBP11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 KLHL42Q9P2K6 505 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 SLC5A6Q9Y289 635 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 CRYL1Q9Y2S2 319 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 NEU2Q9Y3R4 380 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MAU2Q9Y6X3 613 aa11.68□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 ZCWPW2A0A1B0GU75 182 aa11.67□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 FAM237BA0A1B0GVD1 139 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms