RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 C17orf62Q9BQA9 187 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 C20orf96Q9NUD7 363 aaPredicted RBP13.49□□□□□ -0.25
UPF3A-204ENST00000475218 IRAK4Q9NWZ3 460 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 P4HTMQ9NXG6 502 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 KLHL42Q9P2K6 505 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 CTSFQ9UBX1 484 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 NDOR1Q9UHB4 597 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 FBXO5Q9UKT4 447 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 DHRS7Q9Y394 339 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 MAD1L1Q9Y6D9 718 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 MDC1Q14676 2089 aaKnown RBP13.49□□□□□ -0.25
UPF3A-204ENST00000475218 GFYI3L273 518 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 SLC16A8O95907 504 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 ARSFP54793 590 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 PTK6Q13882 451 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 GRM7Q14831 915 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 PRTGQ2VWP7 1150 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 PRR30Q53SZ7 412 aaPredicted RBP13.48□□□□□ -0.25
UPF3A-204ENST00000475218 HSP90AA5PQ58FG0 334 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 WASHC2DQ5SRD0 308 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 ZNF425Q6IV72 752 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 NEK10Q6ZWH5 1172 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 PAQR7Q86WK9 346 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 PPFIBP2Q8ND30 876 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 PTERQ96BW5 349 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 PWWP2AQ96N64 755 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 FOPNLQ96NB1 174 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 GPR21Q99679 349 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 AARSD1Q9BTE6 412 aaKnown RBP13.48□□□□□ -0.25
UPF3A-204ENST00000475218 DPH7Q9BTV6 452 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 SLC26A1Q9H2B4 701 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 GPN3Q9UHW5 284 aaPredicted RBP13.48□□□□□ -0.25
UPF3A-204ENST00000475218 DOCK10Q96BY6 2186 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 A0A0J9YVX5 310 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 CTAGE9A4FU28 777 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 VSTM2BA6NLU5 285 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 E5RI56 91 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 E7ENX8 843 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 SOCS6O14544 535 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 DNALI1O14645 258 aaPredicted RBP13.48□□□□□ -0.25
UPF3A-204ENST00000475218 PFDN6O15212 129 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 TP73O15350 636 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 SRPX2O60687 465 aaPredicted RBP13.48□□□□□ -0.25
UPF3A-204ENST00000475218 SKIV2L2P42285 1042 aaKnown RBP13.48□□□□□ -0.25
UPF3A-204ENST00000475218 TAP2Q03519 686 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 DHX9Q08211 1270 aaKnown RBP13.48□□□□□ -0.25
UPF3A-204ENST00000475218 THOC5Q13769 683 aaKnown RBP13.48□□□□□ -0.25
UPF3A-204ENST00000475218 CRYMQ14894 314 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 TCTE1Q5JU00 501 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 JMJD6Q6NYC1 403 aaPredicted RBP13.48□□□□□ -0.25
UPF3A-204ENST00000475218 SHISA6Q6ZSJ9 500 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 PIWIL4Q7Z3Z4 852 aaKnown RBP13.48□□□□□ -0.25
UPF3A-204ENST00000475218 CPNE9Q8IYJ1 553 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 FBXO15Q8NCQ5 510 aaPredicted RBP13.48□□□□□ -0.25
UPF3A-204ENST00000475218 MAGEC3Q8TD91 643 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 PLCD4Q9BRC7 762 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 WDR54Q9H977 334 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 GPR83Q9NYM4 423 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 LUZP4Q9P127 313 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 SLC17A6Q9P2U8 582 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 PCYOX1Q9UHG3 505 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 VPS9D1Q9Y2B5 631 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 ZNF451Q9Y4E5 1061 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 PCDHGB7Q9Y5F8 929 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 MRFAP1Q9Y605 127 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 HS3ST3B1Q9Y662 390 aa13.48□□□□□ -0.25
UPF3A-204ENST00000475218 HYKKA2RU49 373 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 H0YGG7 62 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 ALOX12BO75342 701 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 ALBP02768 609 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 MPC1LP0DKB6 136 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 ERVK-10P10266 1014 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 UQCRFS1P47985 274 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 PNLIPRP1P54315 467 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 RRADP55042 308 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 ARF3P61204 181 aaPredicted RBP13.47□□□□□ -0.25
UPF3A-204ENST00000475218 ARHGAP19Q14CB8 494 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 YOD1Q5VVQ6 348 aaPredicted RBP13.47□□□□□ -0.25
UPF3A-204ENST00000475218 SLC6A19Q695T7 634 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 CREG2Q8IUH2 290 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.47□□□□□ -0.25
UPF3A-204ENST00000475218 C2CD4AQ8NCU7 369 aaPredicted RBP13.47□□□□□ -0.25
UPF3A-204ENST00000475218 GRK7Q8WTQ7 553 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 SMPDL3AQ92484 453 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 NDNQ99608 321 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 MFRPQ9BY79 579 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 ZNF552Q9H707 407 aaPredicted RBP13.47□□□□□ -0.25
UPF3A-204ENST00000475218 ZBTB20Q9HC78 741 aaPredicted RBP13.47□□□□□ -0.25
UPF3A-204ENST00000475218 IARS2Q9NSE4 1012 aaKnown RBP13.47□□□□□ -0.25
UPF3A-204ENST00000475218 MAP4K5Q9Y4K4 846 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 MAU2Q9Y6X3 613 aa13.47□□□□□ -0.25
UPF3A-204ENST00000475218 USP9YO00507 2555 aaPredicted RBP13.47□□□□□ -0.25
UPF3A-204ENST00000475218 ZSCAN12O43309 604 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 CATP04040 527 aaKnown RBP13.46□□□□□ -0.25
UPF3A-204ENST00000475218 MMP11P24347 488 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 PGGT1BP53609 377 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 SOX8P57073 446 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 GLIPR1L2Q4G1C9 344 aa13.46□□□□□ -0.25
UPF3A-204ENST00000475218 RBM20Q5T481 1227 aaKnown RBP13.46□□□□□ -0.25
UPF3A-204ENST00000475218 ICE2Q659A1 982 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms