RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ASF1AQ9Y294 204 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 DHRS7Q9Y394 339 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 NIPBLQ6KC79 2804 aaeCLIP11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 FER1L5A0AVI2 2057 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 ZGRF1Q86YA3 2104 aa11.5□□□□□ -0.57
SQSTM1-206ENST00000466342 POLEQ07864 2286 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 PCSK5Q92824 1860 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 KIF1CO43896 1103 aaKnown RBP11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 ACSL3O95573 720 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 FAM153BP0C7A2 387 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 MYBL2P10244 700 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 FGF5P12034 268 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 NELFEP18615 380 aaKnown RBP11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 GP5P40197 560 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 CDKN2DP55273 166 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 ITGA1P56199 1179 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 TIAL1Q01085 375 aaKnown RBP eCLIP11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 CHAF1BQ13112 559 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 DNASE1L3Q13609 305 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 EFTUD2Q15029 972 aaKnown RBP eCLIP11.49□□□□□ -0.572e-11■■■■□ 25.8
SQSTM1-206ENST00000466342 PLCL1Q15111 1095 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 ZRSR2Q15696 482 aaKnown RBP11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 FAM153CQ494X1 144 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 ACSBG2Q5FVE4 666 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 UBAP2Q5T6F2 1119 aaKnown RBP11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 HECTD2Q5U5R9 776 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 CPZQ66K79 652 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 UNC5DQ6UXZ4 953 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 FAM92BQ6ZTR7 304 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 BPHLQ86WA6 291 aaPredicted RBP11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 KMT5CQ86Y97 462 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 GSPT2Q8IYD1 628 aaKnown RBP11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 TBC1D21Q8IYX1 336 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 RBMXL3Q8N7X1 1067 aaKnown RBP11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 PPM1NQ8N819 430 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 GPATCH11Q8N954 259 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 SIDT2Q8NBJ9 832 aaKnown RBP11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 PHC3Q8NDX5 983 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 ACVR1CQ8NER5 493 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 OR5K2Q8NHB8 316 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 INPP5DQ92835 1189 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 RNF31Q96EP0 1072 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 VPS39Q96JC1 886 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 SLC41A2Q96JW4 573 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 FCRL4Q96PJ5 515 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 OR6C1Q96RD1 312 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 RBBP8Q99708 897 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 HGH1Q9BTY7 390 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 ING2Q9H160 280 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 SLC24A2Q9UI40 661 aa11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 TRMT6Q9UJA5 497 aaKnown RBP11.49□□□□□ -0.57
SQSTM1-206ENST00000466342 MTORP42345 2549 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 IGHV5-51A0A0C4DH38 117 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 FAM95CA0A1B0GW59 222 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 OR5K3A6NET4 321 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 ARGFXA6NJG6 315 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 EIF3FO00303 357 aaPredicted RBP11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 CEACAM4O75871 244 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 KIAA0754O94854 1291 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 MT-ND3P03897 115 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 RPN2P04844 631 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 CBSLP0DN79 551 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 ENO3P13929 434 aaPredicted RBP11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 FDXRP22570 491 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 ITGA3P26006 1051 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 CBSP35520 551 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 SKIV2L2P42285 1042 aaKnown RBP11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 PER3P56645 1201 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 SH3BP2P78314 561 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 ABRQ12979 859 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 UGT8Q16880 541 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 KLHL38Q2WGJ6 581 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 NEK10Q6ZWH5 1172 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 TRMT10CQ7L0Y3 403 aaKnown RBP11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 OOSP2Q86WS3 158 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 CPNE9Q8IYJ1 553 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 IQCKQ8N0W5 287 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 CARFQ8N187 725 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 OR5AR1Q8NGP9 310 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 SKA2Q8WVK7 121 aaPredicted RBP11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 ELMO2Q96JJ3 720 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 OLFM1Q99784 485 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 TXLNGYQ9BZA5 131 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 ACTL8Q9H568 366 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 ACSS3Q9H6R3 686 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 PDE7BQ9NP56 450 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 HRASLS2Q9NWW9 162 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 POLG2Q9UHN1 485 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 TSR3Q9UJK0 312 aaKnown RBP11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 VWA7Q9Y334 891 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 ANKRD12Q6UB98 2062 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 FBN3Q75N90 2809 aa11.48□□□□□ -0.57
SQSTM1-206ENST00000466342 PCM1Q15154 2024 aa11.47□□□□□ -0.57
SQSTM1-206ENST00000466342 A0A087WUV0 522 aaPredicted RBP11.47□□□□□ -0.57
SQSTM1-206ENST00000466342 TLCD2A6NGC4 264 aa11.47□□□□□ -0.57
SQSTM1-206ENST00000466342 C21orf140B9A014 251 aa11.47□□□□□ -0.57
SQSTM1-206ENST00000466342 PRSS44E7EML9 344 aa11.47□□□□□ -0.57
SQSTM1-206ENST00000466342 LRRTM2O43300 516 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms