RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	LOC102723996	A0A087X1L8	192 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	IGHV1-45	A0A0A0MS14	117 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815		A0A1B0GUH1	482 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	WISP2	O76076	250 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	RPN2	P04844	631 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	ACPP	P15309	386 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	ADRA1D	P25100	572 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	MST1	P26927	711 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	ARNT	P27540	789 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	CYLC1	P35663	651 aa	Predicted RBP	10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	CARS	P49589	748 aa	Known RBP	10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	FASTK	Q14296	549 aa	Known RBP	10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	NAA30	Q147X3	362 aa	Predicted RBP	10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	INA	Q16352	499 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	FAM214A	Q32MH5	1076 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	VWA2	Q5GFL6	755 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	PRMT9	Q6P2P2	845 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	FAM180A	Q6UWF9	173 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	PRUNE1	Q86TP1	453 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	SHISA5	Q8N114	240 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	AMER3	Q8N944	861 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	ACRBP	Q8NEB7	543 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	CFAP61	Q8NHU2	1237 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	BRIX1	Q8TDN6	353 aa	Known RBP	10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	HAS2	Q92819	552 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	PANX2	Q96RD6	677 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	MIPEP	Q99797	713 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	RAB11FIP5	Q9BXF6	653 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	TREX1	Q9NSU2	369 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	PLA2G3	Q9NZ20	509 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	ZNF282	Q9UDV7	671 aa	Predicted RBP	10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	C3orf18	Q9UK00	162 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815	ZFHX3	Q15911	3703 aa		10.63	□□□□□ -0.71
PTPN7-204	ENST00000462815		A0A0J9YVX5	310 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	PRSS44	E7EML9	344 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	MAP2K7	O14733	419 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	PRMT5	O14744	637 aa	Predicted RBP	10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	LIAS	O43766	372 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	USP1	O94782	785 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	MATN4	O95460	622 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	SERPINA7	P05543	415 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	APOA4	P06727	396 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	ETS1	P14921	441 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	RPS3	P23396	243 aa	Known RBP eCLIP	10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	SLC26A3	P40879	764 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	EMP3	P54852	163 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	ART3	Q13508	389 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	PCOLCE	Q15113	449 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	CTSL3P	Q5NE16	218 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	NDUFAF7	Q7L592	441 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	TMEM139	Q8IV31	216 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	MCEMP1	Q8IX19	187 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	KBTBD2	Q8IY47	623 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	PRSS58	Q8IYP2	241 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	DNAAF3	Q8N9W5	541 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	OR1N1	Q8NGS0	311 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	RAD51AP1	Q96B01	352 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	MIEF2	Q96C03	454 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	CCDC120	Q96HB5	630 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	HES6	Q96HZ4	224 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	BIRC8	Q96P09	236 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	ALS2CR12	Q96Q35	445 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	CHRAC1	Q9NRG0	131 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	PTGFRN	Q9P2B2	879 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	COPG2	Q9UBF2	871 aa		10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	ZC3H7B	Q9UGR2	993 aa	Known RBP	10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	KLF2	Q9Y5W3	355 aa	Predicted RBP	10.62	□□□□□ -0.71
PTPN7-204	ENST00000462815	C2CD3	Q4AC94	2353 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	GOLGA6L9	A6NEM1	432 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	IDS	B3KWA1	339 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815		H0YGG7	62 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	FFAR3	O14843	346 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	GPR42	O15529	346 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	FOXS1	O43638	330 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	FTCD	O95954	541 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	FDXR	P22570	491 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	CDC25B	P30305	580 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	FDFT1	P37268	417 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	CETN2	P41208	172 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	ARF3	P61204	181 aa	Predicted RBP	10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	SRSF11	Q05519	484 aa	Known RBP	10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	DSG2	Q14126	1118 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	HKDC1	Q2TB90	917 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	FASTKD1	Q53R41	847 aa	Known RBP	10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	IRAK1BP1	Q5VVH5	260 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	ZNF425	Q6IV72	752 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	TMEM205	Q6UW68	189 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	PAQR7	Q86WK9	346 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	SIRT6	Q8N6T7	355 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	OR6P1	Q8NGX9	317 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	MOCOS	Q96EN8	888 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	OR2A5	Q96R48	311 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	ZFYVE21	Q9BQ24	234 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	TSSK1B	Q9BXA7	367 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	TGIF2	Q9GZN2	237 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	RNF32	Q9H0A6	362 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	CATSPERZ	Q9NTU4	200 aa		10.61	□□□□□ -0.71
PTPN7-204	ENST00000462815	SPATA7	Q9P0W8	599 aa		10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms