RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 DPY19L3Q6ZPD9 716 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 ZNF367Q7RTV3 350 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 DSG4Q86SJ6 1040 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 FSTL5Q8N475 847 aaPredicted RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 MFSD2AQ8NA29 543 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 SRFBP1Q8NEF9 429 aaKnown RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 BTN2A2Q8WVV5 523 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 AZIN2Q96A70 460 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 HAVCR1Q96D42 359 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 MSANTD3Q96H12 275 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 SLC25A13Q9UJS0 675 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 CDC14AQ9UNH5 594 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 SLC9A8Q9Y2E8 581 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 POLR3HQ9Y535 204 aaPredicted RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 TNFRSF10BO14763 440 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 AKAP8O43823 692 aaKnown RBP6.04□□□□□ -1.44
VPS13D-202ENST00000460333 CCNYL3P0C7X3 344 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 RPL17P18621 184 aaKnown RBP6.04□□□□□ -1.44
VPS13D-202ENST00000460333 RPS3P23396 243 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS13D-202ENST00000460333 DNAJB13P59910 316 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 ACSM2AQ08AH3 577 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 CBLBQ13191 982 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 SEMA3BQ13214 749 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 GNA13Q14344 377 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 MBTPS1Q14703 1052 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 DLG2Q15700 870 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS13D-202ENST00000460333 ADGRF1Q5T601 910 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 HECTD2Q5U5R9 776 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 ACSM2BQ68CK6 577 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 DEF8Q6ZN54 512 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 CLIP4Q8N3C7 705 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 TEX47Q8TBZ9 253 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 UFD1Q92890 307 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 TIFAQ96CG3 184 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 PPM1MQ96MI6 270 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 KCTD7Q96MP8 289 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 IL12RB2Q99665 862 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 FUNDC2Q9BWH2 189 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 MROQ9BYG7 248 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 KLQ9UEF7 1012 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 ENPP5Q9UJA9 477 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 RPL36Q9Y3U8 105 aaKnown RBP6.04□□□□□ -1.44
VPS13D-202ENST00000460333 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.04□□□□□ -1.44
VPS13D-202ENST00000460333 TBL1XO60907 577 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 TIMP1P01033 207 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 NCK1P16333 377 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 OPRL1P41146 370 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 TTPAP49638 278 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 GSK3BP49841 420 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 FADDQ13158 208 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 ADAM15Q13444 863 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 ARHGEF7Q14155 803 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 MRPL58Q14197 206 aaKnown RBP6.04□□□□□ -1.44
VPS13D-202ENST00000460333 SNAPC1Q16533 368 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 MPPE1Q53F39 396 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 KLHL22Q53GT1 634 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 KIAA0930Q6ICG6 404 aaPredicted RBP6.04□□□□□ -1.44
VPS13D-202ENST00000460333 NOXA1Q86UR1 476 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 RALGPS2Q86X27 583 aaPredicted RBP6.04□□□□□ -1.44
VPS13D-202ENST00000460333 ZNF641Q96N77 438 aaPredicted RBP6.04□□□□□ -1.44
VPS13D-202ENST00000460333 SNX18Q96RF0 628 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 ABCB9Q9NP78 766 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 MIEF1Q9NQG6 463 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 SNTG1Q9NSN8 517 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS13D-202ENST00000460333 CASP8AP2Q9UKL3 1982 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 RFPL1O75677 317 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 NDST3O95803 873 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 TBX18O95935 607 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 IGSF6O95976 241 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 EPB42P16452 691 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 GABRR2P28476 465 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 PKLRP30613 574 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 EIF5AP63241 154 aaKnown RBP6.04□□□□□ -1.44
VPS13D-202ENST00000460333 RAB33AQ14088 237 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 COQ5Q5HYK3 327 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 ANKRD26P1Q6NSI1 321 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 ZNF783Q6ZMS7 281 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 IGDCC3Q8IVU1 814 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 SELENOMQ8WWX9 145 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 LINC01599Q8WXQ3 324 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 AP2M1Q96CW1 435 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 PPA2Q9H2U2 334 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 FOLH1BQ9HBA9 442 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 SMOXQ9NWM0 555 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 AGO1Q9UL18 857 aaKnown RBP6.04□□□□□ -1.44
VPS13D-202ENST00000460333 ZFP37Q9Y6Q3 630 aaPredicted RBP6.04□□□□□ -1.44
VPS13D-202ENST00000460333 U3KQV3 271 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 TBC1D3BA6NDS4 549 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 HMX3A6NHT5 357 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 STX16-NPEPL1H3BU86 382 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 M0R233 179 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 KPNA5O15131 536 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 NOBOXO60393 691 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 HLA-DQB2P05538 268 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 FPR1P21462 350 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 HOXC13P31276 330 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 FMO4P31512 558 aa6.04□□□□□ -1.44
VPS13D-202ENST00000460333 GNPDA1P46926 289 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms