RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 ATP1A4Q13733 1029 aa17.11■□□□□ 0.33
MSH6-207ENST00000456246 FASTKQ14296 549 aaKnown RBP17.11■□□□□ 0.33
MSH6-207ENST00000456246 GALNT7Q86SF2 657 aa17.11■□□□□ 0.33
MSH6-207ENST00000456246 PKP4Q99569 1192 aa17.11■□□□□ 0.33
MSH6-207ENST00000456246 SLC30A3Q99726 388 aa17.11■□□□□ 0.33
MSH6-207ENST00000456246 DPH7Q9BTV6 452 aa17.11■□□□□ 0.33
MSH6-207ENST00000456246 SLC26A1Q9H2B4 701 aa17.11■□□□□ 0.33
MSH6-207ENST00000456246 MRPS30Q9NP92 439 aaKnown RBP17.11■□□□□ 0.33
MSH6-207ENST00000456246 IARS2Q9NSE4 1012 aaKnown RBP17.11■□□□□ 0.33
MSH6-207ENST00000456246 TAS2R13Q9NYV9 303 aa17.11■□□□□ 0.33
MSH6-207ENST00000456246 TRMT6Q9UJA5 497 aaKnown RBP17.11■□□□□ 0.33
MSH6-207ENST00000456246 NBASA2RRP1 2371 aa17.11■□□□□ 0.33
MSH6-207ENST00000456246 UBR5O95071 2799 aaPredicted RBP17.11■□□□□ 0.33
MSH6-207ENST00000456246 ANKRD12Q6UB98 2062 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 KRT87PA6NCN2 255 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 USP27XA6NNY8 438 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 K7EM74 188 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 HAUS5O94927 633 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 SLC16A8O95907 504 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 ERVK-10P10266 1014 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 IVDP26440 423 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 EMP3P54852 163 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 VSX2P58304 361 aaPredicted RBP17.1■□□□□ 0.33
MSH6-207ENST00000456246 MPP1Q00013 466 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 RELAQ04206 551 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 CUL1Q13616 776 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 WASHC2DQ5SRD0 308 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 PRMT9Q6P2P2 845 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 OVCH1Q7RTY7 1134 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 CREG2Q8IUH2 290 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 CNTN4Q8IWV2 1026 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 CLEC1AQ8NC01 280 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 CERS2Q96G23 380 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 VPS50Q96JG6 964 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 CAPZA3Q96KX2 299 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 PLCD4Q9BRC7 762 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 ACAT2Q9BWD1 397 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 ASH1LQ9NR48 2969 aaKnown RBP17.1■□□□□ 0.33
MSH6-207ENST00000456246 GPR83Q9NYM4 423 aa17.1■□□□□ 0.33
MSH6-207ENST00000456246 CORO1CQ9ULV4 474 aaPredicted RBP17.1■□□□□ 0.33
MSH6-207ENST00000456246 PCM1Q15154 2024 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 PYCARD-AS1I3L0S3 204 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 ITGAXP20702 1163 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 FOXK1P85037 733 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 PRDX1Q06830 199 aaKnown RBP17.09■□□□□ 0.33
MSH6-207ENST00000456246 SP140Q13342 867 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 SLC9A5Q14940 896 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 MUM1Q2TAK8 710 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 BBS9Q3SYG4 887 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 FAM69BQ5VUD6 431 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 ICE2Q659A1 982 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 SUSD1Q6UWL2 747 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 KLHL7Q8IXQ5 586 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 CPNE9Q8IYJ1 553 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 ZNF480Q8WV37 535 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 SLC6A20Q9NP91 592 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 SLC22A11Q9NSA0 550 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 TAC3Q9UHF0 121 aa17.09■□□□□ 0.33
MSH6-207ENST00000456246 A0A0J9YVX5 310 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 HYKKA2RU49 373 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 E7ENX8 843 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 TXNDC9O14530 226 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 DPM1O60762 260 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 SYF2O95926 243 aaKnown RBP17.08■□□□□ 0.32
MSH6-207ENST00000456246 PDGFAP04085 211 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 C8GP07360 202 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 EZRP15311 586 aaKnown RBP17.08■□□□□ 0.32
MSH6-207ENST00000456246 HRH2P25021 359 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 MCM3P25205 808 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 ARL4CP56559 192 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 TAP2Q03519 686 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 TSTA3Q13630 321 aaPredicted RBP17.08■□□□□ 0.32
MSH6-207ENST00000456246 HIF1AQ16665 826 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 DCAF10Q5QP82 559 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 CYHR1Q6ZMK1 362 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 UBE2R2Q712K3 238 aaPredicted RBP17.08■□□□□ 0.32
MSH6-207ENST00000456246 PALM2Q8IXS6 379 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 FDCSPQ8NFU4 85 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 MCOLN3Q8TDD5 553 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 MVB12AQ96EY5 273 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 PCBD2Q9H0N5 130 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 P4HTMQ9NXG6 502 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 C5AR2Q9P296 337 aa17.08■□□□□ 0.32
MSH6-207ENST00000456246 ZC3H7BQ9UGR2 993 aaKnown RBP17.08■□□□□ 0.32
MSH6-207ENST00000456246 SLC16A5O15375 505 aa17.07■□□□□ 0.32
MSH6-207ENST00000456246 PRPF4O43172 522 aaKnown RBP eCLIP17.07■□□□□ 0.321e-7■■■■■ 27.4
MSH6-207ENST00000456246 CNOT3O75175 753 aaKnown RBP17.07■□□□□ 0.32
MSH6-207ENST00000456246 ZIC2O95409 532 aaPredicted RBP17.07■□□□□ 0.32
MSH6-207ENST00000456246 ALPPP05187 535 aa17.07■□□□□ 0.32
MSH6-207ENST00000456246 UMODP07911 640 aa17.07■□□□□ 0.32
MSH6-207ENST00000456246 MMP11P24347 488 aa17.07■□□□□ 0.32
MSH6-207ENST00000456246 FRG1Q14331 258 aaKnown RBP17.07■□□□□ 0.32
MSH6-207ENST00000456246 MSS51Q4VC12 460 aa17.07■□□□□ 0.32
MSH6-207ENST00000456246 THEMIS2Q5TEJ8 643 aa17.07■□□□□ 0.32
MSH6-207ENST00000456246 VWA5B1Q5TIE3 1220 aa17.07■□□□□ 0.32
MSH6-207ENST00000456246 GARNL3Q5VVW2 1013 aa17.07■□□□□ 0.32
MSH6-207ENST00000456246 FRMPD2BQ6IN97 320 aa17.07■□□□□ 0.32
MSH6-207ENST00000456246 ZNF425Q6IV72 752 aa17.07■□□□□ 0.32
MSH6-207ENST00000456246 HIBCHQ6NVY1 386 aaPredicted RBP17.07■□□□□ 0.32
MSH6-207ENST00000456246 PIWIL4Q7Z3Z4 852 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms