RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 CCDC138Q96M89 665 aa16.65■□□□□ 0.26
USP39-208ENST00000455732 ZNF285Q96NJ3 590 aa16.65■□□□□ 0.26
USP39-208ENST00000455732 MIPEPQ99797 713 aa16.65■□□□□ 0.26
USP39-208ENST00000455732 CPNE1Q99829 537 aa16.65■□□□□ 0.26
USP39-208ENST00000455732 DPH2Q9BQC3 489 aaPredicted RBP16.65■□□□□ 0.26
USP39-208ENST00000455732 PARVBQ9HBI1 364 aa16.65■□□□□ 0.26
USP39-208ENST00000455732 POPDC3Q9HBV1 291 aa16.65■□□□□ 0.26
USP39-208ENST00000455732 PCMTD2Q9NV79 361 aa16.65■□□□□ 0.26
USP39-208ENST00000455732 GEMIN8Q9NWZ8 242 aaKnown RBP16.65■□□□□ 0.26
USP39-208ENST00000455732 EURLQ9NYK6 297 aa16.65■□□□□ 0.26
USP39-208ENST00000455732 ADAMTS6Q9UKP5 1117 aa16.65■□□□□ 0.26
USP39-208ENST00000455732 KLHL20Q9Y2M5 609 aa16.65■□□□□ 0.26
USP39-208ENST00000455732 OR2A25A4D2G3 310 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 CXorf49A8MYA2 514 aaPredicted RBP16.64■□□□□ 0.25
USP39-208ENST00000455732 J3QKU1 62 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 MEN1O00255 615 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 ZSCAN9O15535 394 aaPredicted RBP16.64■□□□□ 0.25
USP39-208ENST00000455732 ZNF749O43361 778 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 CCNDBP1O95273 360 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 SYF2O95926 243 aaKnown RBP16.64■□□□□ 0.25
USP39-208ENST00000455732 RECKO95980 971 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 KLK3P07288 261 aaPredicted RBP16.64■□□□□ 0.25
USP39-208ENST00000455732 ZNF37AP17032 561 aaPredicted RBP16.64■□□□□ 0.25
USP39-208ENST00000455732 CMPK1P30085 196 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 STX2P32856 288 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 RPA3P35244 121 aaPredicted RBP16.64■□□□□ 0.25
USP39-208ENST00000455732 ZC3H12BQ5HYM0 836 aaKnown RBP16.64■□□□□ 0.25
USP39-208ENST00000455732 ATP1A1-AS1Q5TC04 95 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 ZNF385CQ66K41 422 aaPredicted RBP16.64■□□□□ 0.25
USP39-208ENST00000455732 RHBDD2Q6NTF9 364 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 C16orf46Q6P387 395 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 FAM199XQ6PEV8 388 aaPredicted RBP16.64■□□□□ 0.25
USP39-208ENST00000455732 RNF44Q7L0R7 432 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 MCATQ8IVS2 390 aaKnown RBP16.64■□□□□ 0.25
USP39-208ENST00000455732 SYTL1Q8IYJ3 562 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 MCOLN3Q8TDD5 553 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 ANKRD7Q92527 254 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 RUFY1Q96T51 708 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 GPR87Q9BY21 358 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 ADNPQ9H2P0 1102 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 LRRC4CQ9HCJ2 640 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 STARD5Q9NSY2 213 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 DMGDHQ9UI17 866 aaKnown RBP16.64■□□□□ 0.25
USP39-208ENST00000455732 SRPK3Q9UPE1 567 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 PDE10AQ9Y233 779 aa16.64■□□□□ 0.25
USP39-208ENST00000455732 B8ZZF3 427 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 KATNA1O75449 491 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 CREG1O75629 220 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 ENO2P09104 434 aaPredicted RBP16.63■□□□□ 0.25
USP39-208ENST00000455732 FURINP09958 794 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 SFTPCP11686 197 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 GP5P40197 560 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 GCGRP47871 477 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 POLE2P56282 527 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 AP1S2P56377 157 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 TAS2R39P59534 338 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 ABATP80404 500 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 POU4F1Q01851 419 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 PRDX1Q06830 199 aaKnown RBP16.63■□□□□ 0.25
USP39-208ENST00000455732 NAB1Q13506 487 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 ICE2Q659A1 982 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 SUSD1Q6UWL2 747 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 CEP128Q6ZU80 1094 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 RELL1Q8IUW5 271 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 NKAPQ8N5F7 415 aaKnown RBP16.63■□□□□ 0.25
USP39-208ENST00000455732 CEP112Q8N8E3 955 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 PROKR1Q8TCW9 393 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 MR1Q95460 341 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 CLIP3Q96DZ5 547 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 ACAT2Q9BWD1 397 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 SPRTNQ9H040 489 aaPredicted RBP16.63■□□□□ 0.25
USP39-208ENST00000455732 SLC6A20Q9NP91 592 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 MRPS30Q9NP92 439 aaKnown RBP16.63■□□□□ 0.25
USP39-208ENST00000455732 STOX2Q9P2F5 926 aaPredicted RBP16.63■□□□□ 0.25
USP39-208ENST00000455732 TXNDC16Q9P2K2 825 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 TAC3Q9UHF0 121 aa16.63■□□□□ 0.25
USP39-208ENST00000455732 IGKV1-8A0A0C4DH67 115 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 SRPX2O60687 465 aaPredicted RBP16.62■□□□□ 0.25
USP39-208ENST00000455732 CTSVO60911 334 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 PIAS1O75925 651 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 CTSBP07858 339 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 RAB40ALP0C0E4 278 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 CCR10P46092 362 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 PGGT1BP53609 377 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 RELAQ04206 551 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 ERV3-1Q14264 604 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 PHKG1Q16816 387 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 DEFB109BQ30KR1 87 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 TCTE1Q5JU00 501 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 ZNF425Q6IV72 752 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 FAM198BQ6UWH4 519 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 TMEM207Q6UWW9 146 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 PPFIBP2Q8ND30 876 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 GPR22Q99680 433 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 RBBP8Q99708 897 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 PLCD4Q9BRC7 762 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 DPH7Q9BTV6 452 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 SLC7A5P2Q9GIP4 190 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 PCBD2Q9H0N5 130 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 TSPYL1Q9H0U9 437 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms