RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 KIAA0408Q6ZU52 694 aa20.33■□□□□ 0.85
HMGB3-205ENST00000455596 RNF44Q7L0R7 432 aa20.33■□□□□ 0.85
HMGB3-205ENST00000455596 IGDCC3Q8IVU1 814 aa20.33■□□□□ 0.85
HMGB3-205ENST00000455596 CNTN4Q8IWV2 1026 aa20.33■□□□□ 0.85
HMGB3-205ENST00000455596 TMEM102Q8N9M5 508 aaPredicted RBP20.33■□□□□ 0.85
HMGB3-205ENST00000455596 LRRC39Q96DD0 335 aa20.33■□□□□ 0.85
HMGB3-205ENST00000455596 IP6K3Q96PC2 410 aa20.33■□□□□ 0.85
HMGB3-205ENST00000455596 NDNQ99608 321 aa20.33■□□□□ 0.85
HMGB3-205ENST00000455596 DPH7Q9BTV6 452 aa20.33■□□□□ 0.85
HMGB3-205ENST00000455596 SLC25A23Q9BV35 468 aa20.33■□□□□ 0.85
HMGB3-205ENST00000455596 EPN3Q9H201 632 aa20.33■□□□□ 0.85
HMGB3-205ENST00000455596 ANKMY1Q9P2S6 941 aa20.33■□□□□ 0.85
HMGB3-205ENST00000455596 CHMP2BQ9UQN3 213 aa20.33■□□□□ 0.85
HMGB3-205ENST00000455596 PCDHGA9Q9Y5G4 932 aaKnown RBP20.33■□□□□ 0.85
HMGB3-205ENST00000455596 BOD1L1Q8NFC6 3051 aa20.33■□□□□ 0.84
HMGB3-205ENST00000455596 OR2A25A4D2G3 310 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 FITM1A5D6W6 292 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 CCNDBP1O95273 360 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 SLC16A8O95907 504 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 CARSP49589 748 aaKnown RBP20.32■□□□□ 0.84
HMGB3-205ENST00000455596 ATP1A4Q13733 1029 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 WASHC2DQ5SRD0 308 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 HP1BP3Q5SSJ5 553 aaPredicted RBP20.32■□□□□ 0.84
HMGB3-205ENST00000455596 FRMPD2BQ6IN97 320 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 UBE2R2Q712K3 238 aaPredicted RBP20.32■□□□□ 0.84
HMGB3-205ENST00000455596 SPNS2Q8IVW8 549 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 TEX19Q8NA77 164 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 PPFIBP2Q8ND30 876 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 OR2Y1Q8NGV0 311 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 ZNF480Q8WV37 535 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 FKBP10Q96AY3 582 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 CFAP36Q96G28 342 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 SNF8Q96H20 258 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 PWWP2AQ96N64 755 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 ZFYVE21Q9BQ24 234 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 SLC6A20Q9NP91 592 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 PPANQ9NQ55 473 aaKnown RBP20.32■□□□□ 0.84
HMGB3-205ENST00000455596 TAS2R13Q9NYV9 303 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 ZC3H7BQ9UGR2 993 aaKnown RBP20.32■□□□□ 0.84
HMGB3-205ENST00000455596 TAC3Q9UHF0 121 aa20.32■□□□□ 0.84
HMGB3-205ENST00000455596 NRP2O60462 931 aa20.31■□□□□ 0.84
HMGB3-205ENST00000455596 ZIC2O95409 532 aaPredicted RBP20.31■□□□□ 0.84
HMGB3-205ENST00000455596 SKIV2L2P42285 1042 aaKnown RBP20.31■□□□□ 0.84
HMGB3-205ENST00000455596 RGS4P49798 205 aa20.31■□□□□ 0.84
HMGB3-205ENST00000455596 CSRP3P50461 194 aa20.31■□□□□ 0.84
HMGB3-205ENST00000455596 PGDP52209 483 aa20.31■□□□□ 0.84
HMGB3-205ENST00000455596 ARL4CP56559 192 aa20.31■□□□□ 0.84
HMGB3-205ENST00000455596 YBX1P67809 324 aaKnown RBP20.31■□□□□ 0.84
HMGB3-205ENST00000455596 KCNC4Q03721 635 aa20.31■□□□□ 0.84
HMGB3-205ENST00000455596 PRDX1Q06830 199 aaKnown RBP20.31■□□□□ 0.84
HMGB3-205ENST00000455596 HIF1AQ16665 826 aa20.31■□□□□ 0.84
HMGB3-205ENST00000455596 ICE2Q659A1 982 aa20.31■□□□□ 0.84
HMGB3-205ENST00000455596 PIWIL4Q7Z3Z4 852 aaKnown RBP20.31■□□□□ 0.84
HMGB3-205ENST00000455596 GALNT7Q86SF2 657 aa20.31■□□□□ 0.84
HMGB3-205ENST00000455596 PTERQ96BW5 349 aa20.31■□□□□ 0.84
HMGB3-205ENST00000455596 PLCD4Q9BRC7 762 aa20.31■□□□□ 0.84
HMGB3-205ENST00000455596 TRIM31Q9BZY9 425 aa20.31■□□□□ 0.84
HMGB3-205ENST00000455596 SLC22A11Q9NSA0 550 aa20.31■□□□□ 0.84
HMGB3-205ENST00000455596 UTP6Q9NYH9 597 aaKnown RBP20.31■□□□□ 0.84
HMGB3-205ENST00000455596 G3BP2Q9UN86 482 aaKnown RBP20.31■□□□□ 0.84
HMGB3-205ENST00000455596 TEX264Q9Y6I9 313 aa20.31■□□□□ 0.84
HMGB3-205ENST00000455596 HELZ2Q9BYK8 2649 aaKnown RBP20.31■□□□□ 0.84
HMGB3-205ENST00000455596 LOC105369274A0A096LPK9 316 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 LOC102723532A0A0G2JNH3 316 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 HYKKA2RU49 373 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 EFCAB8A8MWE9 144 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 E7ENX8 843 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 CNOT3O75175 753 aaKnown RBP20.3■□□□□ 0.84
HMGB3-205ENST00000455596 SEC31AO94979 1220 aaKnown RBP20.3■□□□□ 0.84
HMGB3-205ENST00000455596 ONECUT2O95948 504 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 AHSGP02765 367 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 PDGFAP04085 211 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 ITGAXP20702 1163 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 GABRB3P28472 473 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 TAP2Q03519 686 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 RBM20Q5T481 1227 aaKnown RBP20.3■□□□□ 0.84
HMGB3-205ENST00000455596 FBXO42Q6P3S6 717 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 OVCH1Q7RTY7 1134 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 MRGPREQ86SM8 312 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 OR4N4Q8N0Y3 316 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 EEF1AKMT1Q8WVE0 214 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 KRT12Q99456 494 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 CLMPQ9H6B4 373 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 MLXIPLQ9NP71 852 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 ABCF3Q9NUQ8 709 aa20.3■□□□□ 0.84
HMGB3-205ENST00000455596 PEX12O00623 359 aa20.29■□□□□ 0.84
HMGB3-205ENST00000455596 NDC80O14777 642 aa20.29■□□□□ 0.84
HMGB3-205ENST00000455596 FANCGO15287 622 aa20.29■□□□□ 0.84
HMGB3-205ENST00000455596 CEACAM4O75871 244 aa20.29■□□□□ 0.84
HMGB3-205ENST00000455596 ALBP02768 609 aa20.29■□□□□ 0.84
HMGB3-205ENST00000455596 EIF2S1P05198 315 aaKnown RBP20.29■□□□□ 0.84
HMGB3-205ENST00000455596 TIAL1Q01085 375 aaKnown RBP eCLIP20.29■□□□□ 0.84
HMGB3-205ENST00000455596 TEDDM1Q5T9Z0 273 aa20.29■□□□□ 0.84
HMGB3-205ENST00000455596 THEMIS2Q5TEJ8 643 aa20.29■□□□□ 0.84
HMGB3-205ENST00000455596 PALM2Q8IXS6 379 aa20.29■□□□□ 0.84
HMGB3-205ENST00000455596 MYO1HQ8N1T3 1032 aa20.29■□□□□ 0.84
HMGB3-205ENST00000455596 MCOLN3Q8TDD5 553 aa20.29■□□□□ 0.84
HMGB3-205ENST00000455596 FER1L6-AS2Q96M78 137 aa20.29■□□□□ 0.84
HMGB3-205ENST00000455596 WDR54Q9H977 334 aa20.29■□□□□ 0.84
HMGB3-205ENST00000455596 PLAC1Q9HBJ0 212 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms