RNA–Protein interactions for RNA: ENST00000454398.1

HLA-DPA3-207, Transcript of major histocompatibility complex, class II, DP alpha 3 (pseudogene), humanhuman

BASIC

Gene HLA-DPA3, Length 229 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA3-207ENST00000454398 MIEF2Q96C03 454 aa5.71□□□□□ -1.5
HLA-DPA3-207ENST00000454398 CABS1Q96KC9 395 aa5.71□□□□□ -1.5
HLA-DPA3-207ENST00000454398 TRIM56Q9BRZ2 755 aaKnown RBP5.71□□□□□ -1.5
HLA-DPA3-207ENST00000454398 YIPF2Q9BWQ6 316 aa5.71□□□□□ -1.5
HLA-DPA3-207ENST00000454398 LRRC40Q9H9A6 602 aa5.71□□□□□ -1.5
HLA-DPA3-207ENST00000454398 MRM3Q9HC36 420 aaKnown RBP5.71□□□□□ -1.5
HLA-DPA3-207ENST00000454398 KLHL1Q9NR64 748 aa5.71□□□□□ -1.5
HLA-DPA3-207ENST00000454398 TRPC4Q9UBN4 977 aa5.71□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ZC3H7BQ9UGR2 993 aaKnown RBP5.71□□□□□ -1.5
HLA-DPA3-207ENST00000454398 TTC7AQ9ULT0 858 aaPredicted RBP5.71□□□□□ -1.5
HLA-DPA3-207ENST00000454398 FAM169AQ9Y6X4 670 aa5.71□□□□□ -1.5
HLA-DPA3-207ENST00000454398 DNAJC13O75165 2243 aa5.71□□□□□ -1.5
HLA-DPA3-207ENST00000454398 SCN2AQ99250 2005 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 SCN3AQ9NY46 2000 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 A0A0A6YYC8 382 aaPredicted RBP5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 IGKV1-8A0A0C4DH67 115 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 A0A1W2PPV9 198 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 DYTNA2CJ06 578 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 VSTM2BA6NLU5 285 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 H0YGG7 62 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 I3L1I5 382 aaPredicted RBP5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 RASGRF2O14827 1237 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 SLC19A2O60779 497 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 NIPSNAP2O75323 286 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 AP2A2O94973 939 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 HPP00738 406 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 IFNB1P01574 187 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 IGHEP01854 428 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 PTMAP06454 111 aaKnown RBP5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 TPM3P06753 285 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 TPM1P09493 284 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 OR56A5P0C7T3 313 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ERVK-10P10266 1014 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ETS1P14921 441 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 CA7P43166 264 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 NAP1L1P55209 391 aaKnown RBP5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 SOX8P57073 446 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ARF3P61204 181 aaPredicted RBP5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ITIH4Q14624 930 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 PCOLCEQ15113 449 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 CTSL3PQ5NE16 218 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 MFSD4BQ5TF39 518 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 CES3Q6UWW8 571 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 BNC2Q6ZN30 1099 aaPredicted RBP5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 RNF44Q7L0R7 432 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 TMTC1Q8IUR5 882 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 KLHDC8BQ8IXV7 354 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 KBTBD2Q8IY47 623 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ZNF295-AS1Q8N0V1 137 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 BEST3Q8N1M1 668 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 CSNK1A1LQ8N752 337 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 TC2NQ8N9U0 490 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 DNAAF3Q8N9W5 541 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 OR2L8Q8NGY9 312 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 HEXDCQ8WVB3 486 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 SREK1Q8WXA9 508 aaKnown RBP5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ZNF285Q96NJ3 590 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ALS2CR12Q96Q35 445 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 MACROD1Q9BQ69 325 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 LACRTQ9GZZ8 138 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 SLC26A1Q9H2B4 701 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ARNT2Q9HBZ2 717 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 SEMA3GQ9NS98 782 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 IL1RAPL1Q9NZN1 696 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 HCN3Q9P1Z3 774 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ZNF282Q9UDV7 671 aaPredicted RBP5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 SEC14L3Q9UDX4 400 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 POLG2Q9UHN1 485 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 NXT1Q9UKK6 140 aaKnown RBP5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 SLC39A10Q9ULF5 831 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 RUVBL1Q9Y265 456 aaKnown RBP5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 REXO2Q9Y3B8 237 aaKnown RBP5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 PCDHA13Q9Y5I0 950 aa5.7□□□□□ -1.5
HLA-DPA3-207ENST00000454398 HRNRQ86YZ3 2850 aaPredicted RBP5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ABCA4P78363 2273 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ANK3Q12955 4377 aaKnown RBP5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ZNF407Q9C0G0 2248 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 IGHV1-45A0A0A0MS14 117 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 TRAV17A0A0B4J275 112 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 A0A1B0GUH1 482 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 FITM1A5D6W6 292 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ZNF860A6NHJ4 632 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 A8MUI8 341 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ARHGEF33A8MVX0 844 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 AKR1B15C9JRZ8 316 aaPredicted RBP5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 CBFA2T2O43439 604 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 CDC123O75794 336 aaPredicted RBP5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 USP1O94782 785 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 C1orf105O95561 183 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 S1PR4O95977 384 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 APOA4P06727 396 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ZSCAN5DPP0CG00 497 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 AOAHP28039 575 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 PTPN7P35236 360 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 RFC3P40938 356 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 ARSFP54793 590 aa5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 HADHBP55084 474 aaKnown RBP5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 EIF3BP55884 814 aaKnown RBP5.69□□□□□ -1.5
HLA-DPA3-207ENST00000454398 SESN2P58004 480 aaPredicted RBP5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms