RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 MSS51Q4VC12 460 aa16.77■□□□□ 0.27
PTPRF-209ENST00000438120 MS4A13Q5J8X5 152 aa16.77■□□□□ 0.27
PTPRF-209ENST00000438120 CELF5Q8N6W0 485 aaKnown RBP16.77■□□□□ 0.27
PTPRF-209ENST00000438120 LRRC58Q96CX6 371 aa16.77■□□□□ 0.27
PTPRF-209ENST00000438120 ZNF347Q96SE7 839 aa16.77■□□□□ 0.27
PTPRF-209ENST00000438120 SRRDQ9UH36 339 aa16.77■□□□□ 0.27
PTPRF-209ENST00000438120 PITPNM1O00562 1244 aa16.77■□□□□ 0.27
PTPRF-209ENST00000438120 COL9A2Q14055 689 aaPredicted RBP16.77■□□□□ 0.27
PTPRF-209ENST00000438120 OR4F6Q8NGB9 312 aa16.77■□□□□ 0.27
PTPRF-209ENST00000438120 FAXDC2Q96IV6 333 aa16.77■□□□□ 0.27
PTPRF-209ENST00000438120 MED28Q9H204 178 aa16.77■□□□□ 0.27
PTPRF-209ENST00000438120 ZNF208O43345 1280 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 TNFP01375 233 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 PRPS1L1P21108 318 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 CHAF1BQ13112 559 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 MLIPQ5VWP3 458 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 FRG2Q64ET8 278 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 C7orf57Q8NEG2 295 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 FRG2BQ96QU4 278 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 KCNA7Q96RP8 456 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 POLR2J2Q9GZM3 115 aaKnown RBP16.76■□□□□ 0.27
PTPRF-209ENST00000438120 GPR88Q9GZN0 384 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 FKBP7Q9Y680 259 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 DLX3O60479 287 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 XKP51811 444 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 SLC25A11Q02978 314 aaKnown RBP16.76■□□□□ 0.27
PTPRF-209ENST00000438120 KCNJ11Q14654 390 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 ACSBG2Q5FVE4 666 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 ZNF221Q9UK13 617 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 PRORSD1PA6NEY8 169 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 INPPL1O15357 1258 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 RENP00797 406 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 SUSD1Q6UWL2 747 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 GOLGA7Q7Z5G4 137 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 SAMD14Q8IZD0 417 aaPredicted RBP16.76■□□□□ 0.27
PTPRF-209ENST00000438120 HIST1H2AAQ96QV6 131 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 SPATA9Q9BWV2 254 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 SP140LQ9H930 580 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 CENPMQ9NSP4 180 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 SCML2Q9UQR0 700 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 PLGP00747 810 aaPredicted RBP16.76■□□□□ 0.27
PTPRF-209ENST00000438120 CSN2P05814 226 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 UFM1P61960 85 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 ANKRD26P1Q6NSI1 321 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 PIGWQ7Z7B1 504 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 SLC22A18Q96BI1 424 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 DHRS1Q96LJ7 313 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 SPIN1Q9Y657 262 aaPredicted RBP16.76■□□□□ 0.27
PTPRF-209ENST00000438120 B4GALT2O60909 372 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 CXCR1P25024 350 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 NRG3P56975 720 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 DSC3Q14574 896 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 ARMC10Q8N2F6 343 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 OXR1Q8N573 874 aa16.76■□□□□ 0.27
PTPRF-209ENST00000438120 A0A0D9SEW6 157 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 DIRAS1O95057 198 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 PRMT2P55345 433 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 TAS2R50P59544 299 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 IQCCQ4KMZ1 466 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 TRIM74Q86UV6 250 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 TMEM203Q969S6 136 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 CHIAQ9BZP6 476 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 NID2Q14112 1375 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.75■□□□□ 0.27
PTPRF-209ENST00000438120 ARPC2O15144 300 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 RPLP0P05388 317 aaKnown RBP16.75■□□□□ 0.27
PTPRF-209ENST00000438120 RB1P06400 928 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 BRAT1Q6PJG6 821 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 TMPRSS9Q7Z410 1059 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 CANT1Q8WVQ1 401 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 KXD1Q9BQD3 176 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 BCO2Q9BYV7 579 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 B3GNT4Q9C0J1 378 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 SMOC2Q9H3U7 446 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 FLRT1Q9NZU1 646 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 PRKD3O94806 890 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 CH25HO95992 272 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 CYP11A1P05108 521 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 GPX6P59796 221 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 LGI4Q8N135 537 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 NAXEQ8NCW5 288 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 NFKBIDQ8NI38 313 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 OR51B5Q9H339 312 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 ATXN10Q9UBB4 475 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 GIMAP2Q9UG22 337 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 RPP14O95059 124 aaKnown RBP16.75■□□□□ 0.27
PTPRF-209ENST00000438120 SLC6A9P48067 706 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 PREPP48147 710 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 GDI2P50395 445 aaKnown RBP16.75■□□□□ 0.27
PTPRF-209ENST00000438120 SCN1BQ07699 218 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 DPY19L1Q2PZI1 675 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 ZNF627Q7L945 461 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 ZC3HC1Q86WB0 502 aaKnown RBP16.75■□□□□ 0.27
PTPRF-209ENST00000438120 EFCAB11Q9BUY7 163 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 ZNF99A8MXY4 864 aaPredicted RBP16.75■□□□□ 0.27
PTPRF-209ENST00000438120 TPD52L2O43399 206 aaKnown RBP16.75■□□□□ 0.27
PTPRF-209ENST00000438120 MLLT6P55198 1093 aaPredicted RBP16.75■□□□□ 0.27
PTPRF-209ENST00000438120 TTLQ8NG68 377 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 OR9I1Q8NGQ6 314 aa16.75■□□□□ 0.27
PTPRF-209ENST00000438120 HAVCR1Q96D42 359 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms