RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 PCDHA9Q9Y5H5 950 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 CEPT1Q9Y6K0 416 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 SCN8AQ9UQD0 1980 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 PRRC2CQ9Y520 2896 aaKnown RBP8.13□□□□□ -1.11
CD44-208ENST00000428726 ABHD14A-ACY1A0A1B0GW23 586 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 H0YJX3 145 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 HS6ST1O60243 411 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 SERPINA1P01009 418 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 TIMP2P16035 220 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 AGXTP21549 392 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 NNMTP40261 264 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 MTHFRP42898 656 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 CD300CQ08708 224 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 MADCAM1Q13477 382 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 RCAN2Q14206 197 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 DHCR24Q15392 516 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 FGD3Q5JSP0 725 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 IRAK1BP1Q5VVH5 260 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 PDE12Q6L8Q7 609 aaKnown RBP8.13□□□□□ -1.11
CD44-208ENST00000428726 DLEU7Q6UYE1 221 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 ZNF852Q6ZMS4 543 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 TMEM26Q6ZUK4 368 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 VN1R2Q8NFZ6 395 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 SLC13A3Q8WWT9 602 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 TMBIM1Q969X1 311 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 ACDQ96AP0 544 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 KXD1Q9BQD3 176 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 ABCG4Q9H172 646 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 ANKRA2Q9H9E1 313 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 PTBP2Q9UKA9 531 aaKnown RBP8.13□□□□□ -1.11
CD44-208ENST00000428726 ERVW-1Q9UQF0 538 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 PCDHB1Q9Y5F3 818 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 SNX8Q9Y5X2 465 aa8.13□□□□□ -1.11
CD44-208ENST00000428726 SMIM31A0A1B0GVY4 71 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 TOR1BO14657 336 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 KPNA5O15131 536 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 XPNPEP2O43895 674 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 PRKRAO75569 313 aaKnown RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 CLDN9O95484 217 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 POP4O95707 220 aaKnown RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 OR56A5P0C7T3 313 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 PRR35P0CG20 571 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 LAMP1P11279 417 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 JAK1P23458 1154 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 MAP4P27816 1152 aaKnown RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 NSG1P42857 185 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 MRPL19P49406 292 aaKnown RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 DGKGP49619 791 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 TFF2Q03403 129 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 TMEM115Q12893 351 aaPredicted RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 CARTPTQ16568 116 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 SPATS1Q496A3 300 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 HTR3DQ70Z44 454 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 ZNF551Q7Z340 670 aaPredicted RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 SYT12Q8IV01 421 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 MSRB3Q8IXL7 192 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 C1orf52Q8N6N3 182 aaKnown RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 SMYD1Q8NB12 490 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 SPPL3Q8TCT6 385 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 GAB3Q8WWW8 586 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 ZUFSPQ96AP4 578 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 PANX1Q96RD7 426 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 REXO4Q9GZR2 422 aaKnown RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 SLC52A3Q9NQ40 469 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 OLAHQ9NV23 265 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 ABCD2Q9UBJ2 740 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 RSL24D1Q9UHA3 163 aaKnown RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 LEF1Q9UJU2 399 aaPredicted RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 ANAPC2Q9UJX6 822 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 TRPM6Q9BX84 2022 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 LOC400499M0QZD8 3231 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 MICAL3Q7RTP6 2002 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 LINC01565O15544 149 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 TPST2O60704 377 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 RECQL5O94762 991 aaPredicted RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 CST1P01037 141 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 PFKLP17858 780 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 PIGAP37287 484 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 FOXM1Q08050 763 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 MEP1AQ16819 746 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 GRAMD4Q6IC98 578 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 LILRA6Q6PI73 481 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 CCDC81Q6ZN84 652 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 BPIFB6Q8NFQ5 453 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 CIDECQ96AQ7 238 aaPredicted RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 TMEM159Q96B96 161 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 SDCCAG3Q96C92 435 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 PDLIM5Q96HC4 596 aaKnown RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 UHRF1Q96T88 793 aaPredicted RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 TRIM15Q9C019 465 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 ZDHHC3Q9NYG2 299 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 NUDT4Q9NZJ9 180 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 SPASTQ9UBP0 616 aa8.12□□□□□ -1.11
CD44-208ENST00000428726 EIF3LQ9Y262 564 aaKnown RBP8.12□□□□□ -1.11
CD44-208ENST00000428726 TANC1Q9C0D5 1861 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 DLGAP1O14490 977 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 SLC31A1O15431 190 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 NARSO43776 548 aaKnown RBP8.11□□□□□ -1.11
CD44-208ENST00000428726 LILRB3O75022 631 aa8.11□□□□□ -1.11
CD44-208ENST00000428726 ATP6V1G1O75348 118 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms