RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CREBBPQ92793 2442 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 CELSR1Q9NYQ6 3014 aa7.72□□□□□ -1.17
VIM-202ENST00000421459 RP1L1Q8IWN7 2480 aaPredicted RBP7.72□□□□□ -1.17
VIM-202ENST00000421459 TEP1Q99973 2627 aaKnown RBP7.71□□□□□ -1.17
VIM-202ENST00000421459 NSG1A0A0A6YYJ2 146 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 IGHV3-20A0A0C4DH32 117 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 A0A1B0GUH1 482 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 HEATR9A2RTY3 570 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 OR2W5A6NFC9 320 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 GOLGA8KD6RF30 607 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 H0YGG7 62 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 GOLGA8TH3BQL2 631 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 MAP2K7O14733 419 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 PSMD3O43242 534 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 KDM1AO60341 852 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 UNC5CO95185 931 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 WDPCPO95876 746 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 IFNB1P01574 187 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 APOA4P06727 396 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 FBLP22087 321 aaKnown RBP7.71□□□□□ -1.18
VIM-202ENST00000421459 ADRA1DP25100 572 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 CETN2P41208 172 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 TNFSF10P50591 281 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 EMP2P54851 167 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 ARF3P61204 181 aaPredicted RBP7.71□□□□□ -1.18
VIM-202ENST00000421459 MAT1AQ00266 395 aaKnown RBP7.71□□□□□ -1.18
VIM-202ENST00000421459 OCA2Q04671 838 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 ACVR1Q04771 509 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 SNX1Q13596 522 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 TSTA3Q13630 321 aaPredicted RBP7.71□□□□□ -1.18
VIM-202ENST00000421459 SKOR2Q2VWA4 1001 aaPredicted RBP7.71□□□□□ -1.18
VIM-202ENST00000421459 FAM214AQ32MH5 1076 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 CTSL3PQ5NE16 218 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 FCRLBQ6BAA4 426 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 PTRHD1Q6GMV3 140 aaKnown RBP7.71□□□□□ -1.18
VIM-202ENST00000421459 RPUSD3Q6P087 351 aaKnown RBP7.71□□□□□ -1.18
VIM-202ENST00000421459 GFRALQ6UXV0 394 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 NCCRP1Q6ZVX7 275 aaPredicted RBP7.71□□□□□ -1.18
VIM-202ENST00000421459 NDUFAF7Q7L592 441 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 NLRP9Q7RTR0 991 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 PEX26Q7Z412 305 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 LINC00523Q86TU6 105 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 PLD3Q8IV08 490 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 AMER3Q8N944 861 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 C1orf54Q8WWF1 131 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 NR4A3Q92570 626 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 RELTQ969Z4 430 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 ZUFSPQ96AP4 578 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 CCDC120Q96HB5 630 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 CABS1Q96KC9 395 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 TRIM56Q9BRZ2 755 aaKnown RBP7.71□□□□□ -1.18
VIM-202ENST00000421459 DPH7Q9BTV6 452 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 TRIM5Q9C035 493 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.71□□□□□ -1.18
VIM-202ENST00000421459 P2RY12Q9H244 342 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 CATSPERZQ9NTU4 200 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 ABCF3Q9NUQ8 709 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 INTS7Q9NVH2 962 aaKnown RBP7.71□□□□□ -1.18
VIM-202ENST00000421459 TRPC4Q9UBN4 977 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 ZNF282Q9UDV7 671 aaPredicted RBP7.71□□□□□ -1.18
VIM-202ENST00000421459 NXT1Q9UKK6 140 aaKnown RBP7.71□□□□□ -1.18
VIM-202ENST00000421459 ITGB1BP2Q9UKP3 347 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 AMFRQ9UKV5 643 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 RUVBL1Q9Y265 456 aaKnown RBP7.71□□□□□ -1.18
VIM-202ENST00000421459 TCAF1Q9Y4C2 921 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 ABCA12Q86UK0 2595 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 TACC2O95359 2948 aa7.71□□□□□ -1.18
VIM-202ENST00000421459 IGHV1-45A0A0A0MS14 117 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 A0A0A6YYC8 382 aaPredicted RBP7.7□□□□□ -1.18
VIM-202ENST00000421459 IGKV1-8A0A0C4DH67 115 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 DYTNA2CJ06 578 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 OR2A25A4D2G3 310 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 GOLGA6L9A6NEM1 432 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 IDSB3KWA1 339 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 TARM1B6A8C7 271 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 C19orf84I3L1E1 186 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 I3L1I5 382 aaPredicted RBP7.7□□□□□ -1.18
VIM-202ENST00000421459 CCL21O00585 134 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 PRMT5O14744 637 aaPredicted RBP7.7□□□□□ -1.18
VIM-202ENST00000421459 CD3EAPO15446 510 aaKnown RBP7.7□□□□□ -1.18
VIM-202ENST00000421459 P2RX6O15547 441 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 FOXS1O43638 330 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 LIASO43766 372 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 SRPX2O60687 465 aaPredicted RBP7.7□□□□□ -1.18
VIM-202ENST00000421459 NIPSNAP2O75323 286 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 WFS1O76024 890 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 SUN1O94901 812 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 RPN2P04844 631 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 HEXBP07686 556 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 NMBRP28336 390 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 HTR1EP28566 365 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 FMO4P31512 558 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 CARSP49589 748 aaKnown RBP7.7□□□□□ -1.18
VIM-202ENST00000421459 TERF1P54274 439 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 SESN2P58004 480 aaPredicted RBP7.7□□□□□ -1.18
VIM-202ENST00000421459 PRAMEP78395 509 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 NAA30Q147X3 362 aaPredicted RBP7.7□□□□□ -1.18
VIM-202ENST00000421459 PCOLCEQ15113 449 aa7.7□□□□□ -1.18
VIM-202ENST00000421459 OASLQ15646 514 aaKnown RBP7.7□□□□□ -1.18
VIM-202ENST00000421459 PRTGQ2VWP7 1150 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms