RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PCED1AQ9H1Q7 454 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 CATSPERBQ9H7T0 1116 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 DYRK4Q9NR20 520 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 OR12D3Q9UGF7 316 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 ITIH6Q6UXX5 1313 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 WDR87Q6ZQQ6 2873 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 UQCRHLA0A096LP55 91 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 BCLAF3A2AJT9 711 aaKnown RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 LRRC72A6NJI9 287 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 C2CD4BA6NLJ0 364 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 WASH3PC4AMC7 463 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 KIF2AO00139 706 aaPredicted RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 PRPSAP2O60256 369 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 UQCRHP07919 91 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 PSMA2P25787 234 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 SGSHP51688 502 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 YPEL5P62699 121 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 PITX1P78337 314 aaPredicted RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 GFPT1Q06210 699 aaPredicted RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 ZNF33AQ06730 810 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 EIF4EBP2Q13542 120 aaPredicted RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 ELAVL3Q14576 367 aaKnown RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 CNGA3Q16281 694 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 DUOXA1Q1HG43 343 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 DAB2IPQ5VWQ8 1189 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 SPECC1LQ69YQ0 1117 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 WDR59Q6PJI9 974 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 RANBP10Q6VN20 620 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 H1FNTQ75WM6 255 aaPredicted RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 MON1BQ7L1V2 547 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 IRF2BP2Q7Z5L9 587 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 PPHLN1Q8NEY8 458 aaKnown RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 CADM4Q8NFZ8 388 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 RLN3Q8WXF3 142 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 SORCS1Q8WY21 1168 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 OR8D1Q8WZ84 308 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 NTAN1Q96AB6 310 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 ZNF653Q96CK0 615 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 TBC1D31Q96DN5 1066 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 RNF125Q96EQ8 232 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 PRMT1Q99873 361 aaKnown RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 TMEM245Q9H330 911 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 SGK2Q9HBY8 427 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 GAR1Q9NY12 217 aaKnown RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 XPO7Q9UIA9 1087 aaKnown RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 SLC13A4Q9UKG4 626 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 CLEC4EQ9ULY5 219 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 RALGAPA1Q6GYQ0 2036 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 IGHV1OR15-9A0A0B4J2B8 117 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 FAM170AA1A519 330 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 ILVBLA1L0T0 632 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 ZSCAN5CA6NGD5 496 aaPredicted RBP6.3□□□□□ -1.4
USP40-202ENST00000409945 PRSS47A8MTI9 375 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 B4E171 279 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 CLGNO14967 610 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 ALOX15BO15296 676 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 GCATO75600 419 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 TUBB4AP04350 444 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 PLEKP08567 350 aaPredicted RBP6.3□□□□□ -1.4
USP40-202ENST00000409945 HLA-EP13747 358 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 CAPN3P20807 821 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 PRKCHP24723 683 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 TYK2P29597 1187 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 RFC1P35251 1148 aaPredicted RBP6.3□□□□□ -1.4
USP40-202ENST00000409945 TSPAN7P41732 249 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 TPMTP51580 245 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 PROK1P58294 105 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 CCZ1BP86790 482 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 CCZ1P86791 482 aaPredicted RBP6.3□□□□□ -1.4
USP40-202ENST00000409945 RAD51Q06609 339 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.3□□□□□ -1.4
USP40-202ENST00000409945 AP5B1Q2VPB7 878 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 CCDC14Q49A88 953 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 C5orf22Q49AR2 442 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 TMEM215Q68D42 235 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 PHLDB2Q86SQ0 1253 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 CNGA4Q8IV77 575 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 C17orf53Q8N3J3 647 aaPredicted RBP6.3□□□□□ -1.4
USP40-202ENST00000409945 HDDC3Q8N4P3 179 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 DCAF4L2Q8NA75 395 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 FAM110DQ8TAY7 271 aaPredicted RBP6.3□□□□□ -1.4
USP40-202ENST00000409945 PPP1R16AQ96I34 528 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 PCDHB18PQ96TA0 734 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 AGAP2Q99490 1192 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 TIMP4Q99727 224 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 FEM1AQ9BSK4 669 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 GPR174Q9BXC1 333 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 FRMD8Q9BZ67 464 aaPredicted RBP6.3□□□□□ -1.4
USP40-202ENST00000409945 PRSS16Q9NQE7 514 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 CNOT8Q9UFF9 292 aaKnown RBP6.3□□□□□ -1.4
USP40-202ENST00000409945 USP34Q70CQ2 3546 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 MYO15AQ9UKN7 3530 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 GVINP1Q7Z2Y8 2422 aa6.3□□□□□ -1.4
USP40-202ENST00000409945 OTOGLQ3ZCN5 2332 aa6.29□□□□□ -1.4
USP40-202ENST00000409945 ZNF292O60281 2723 aa6.29□□□□□ -1.4
USP40-202ENST00000409945 THADAQ6YHU6 1953 aa6.29□□□□□ -1.4
USP40-202ENST00000409945 CXorf51AA0A1B0GTR3 108 aa6.29□□□□□ -1.4
USP40-202ENST00000409945 HNRNPRO43390 633 aaKnown RBP6.29□□□□□ -1.4
USP40-202ENST00000409945 RAMP2O60895 175 aa6.29□□□□□ -1.4
USP40-202ENST00000409945 IL1BP01584 269 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms