RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 SH3BP4Q9P0V3 963 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 STOML1Q9UBI4 398 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 WNT16Q9UBV4 365 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 ATPIF1Q9UII2 106 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 ANAPC2Q9UJX6 822 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 BAG5Q9UL15 447 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 CHKBQ9Y259 395 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 CFL2Q9Y281 166 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 BTBD3Q9Y2F9 522 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 PLEKHM1Q9Y4G2 1056 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 PCDHGA5Q9Y5G8 931 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 PCDHGA1Q9Y5H4 931 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 NFS1Q9Y697 457 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 F5P12259 2224 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 VPS13AQ96RL7 3174 aa4.47□□□□□ -1.69
SF3B1-202ENST00000409915 KMT2EQ8IZD2 1858 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 CCDC187A0A096LP49 1063 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 OR2W5A6NFC9 320 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 GAGE10A6NGK3 116 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 PRSS29PA6NIE9 313 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 SH2D7A6NKC9 451 aaPredicted RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 FAM170BA6NMN3 283 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 NOTOA8MTQ0 251 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 NEDD8-MDP1E9PL57 170 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 VEGFDO43915 354 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 DAB1O75553 588 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 RSL1D1O76021 490 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 NFATC1O95644 943 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 LSM8O95777 96 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 MPIG6BO95866 241 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 TRUB2O95900 331 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 EGFP01133 1207 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 KRT6AP02538 564 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 KRT6BP04259 564 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 LYNP07948 512 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 LTA4HP09960 611 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 UNGP13051 313 aaPredicted RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 VCLP18206 1134 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 AOC1P19801 751 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 PTPN3P26045 913 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 CDH5P33151 784 aaPredicted RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 TTKP33981 857 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 OPRD1P41143 372 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 NSFP46459 744 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 SLC6A11P48066 632 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 NUMBP49757 651 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 SGSHP51688 502 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 BMXP51813 675 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 HNRNPFP52597 415 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 VAV2P52735 878 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 CAPZA1P52907 286 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 EIF3BP55884 814 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 ATP6V0D1P61421 351 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 UFM1P61960 85 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 YWHAZP63104 245 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 KCNJ2P63252 427 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 GUCY2DQ02846 1103 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 PRKCQQ04759 706 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 CDK5R2Q13319 367 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 BOP1Q14137 746 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 TGFBIQ15582 683 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 ANKRD20A4Q4UJ75 823 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 TDRD12Q587J7 1177 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 DCAF6Q58WW2 860 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 ZNF766Q5HY98 468 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 CST9LP1Q5W188 147 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 HLA-DQA1Q5Y7H0 255 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 TRNP1Q6NT89 227 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 C8orf74Q6P047 294 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 MSANTD2Q6P1R3 559 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 RFWD3Q6PCD5 774 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 RHBDF2Q6PJF5 856 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 RAD9BQ6WBX8 426 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 ZNF852Q6ZMS4 543 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 MED25Q71SY5 747 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 ZNF571Q7Z3V5 609 aaPredicted RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 IRF2BP2Q7Z5L9 587 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 NET1Q7Z628 596 aaPredicted RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 KBTBD6Q86V97 674 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 CIR1Q86X95 450 aaPredicted RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 ZNF677Q86XU0 584 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 TMEM25Q86YD3 366 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 TRIM48Q8IWZ4 208 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 DEFB106AQ8N104 65 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 TRIML2Q8N7C3 387 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 ZNF366Q8N895 744 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 ATP6V0D2Q8N8Y2 350 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 PRSS33Q8NF86 280 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 TNIP2Q8NFZ5 429 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 JOSD2Q8TAC2 188 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 WFDC12Q8WWY7 111 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 FAM3CQ92520 227 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 CORO2AQ92828 525 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 INTS12Q96CB8 462 aaKnown RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 TLCD1Q96CP7 247 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 ERLEC1Q96DZ1 483 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 MYEOVQ96EZ4 313 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 FCRL2Q96LA5 508 aaPredicted RBP4.46□□□□□ -1.7
SF3B1-202ENST00000409915 CEP19Q96LK0 163 aa4.46□□□□□ -1.7
SF3B1-202ENST00000409915 BIRC8Q96P09 236 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms