RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 RAET1GQ6H3X3 334 aa13□□□□□ -0.33
VPS54-203ENST00000409558 NOXRED1Q6NXP6 359 aa13□□□□□ -0.33
VPS54-203ENST00000409558 TMEM126BQ8IUX1 230 aa13□□□□□ -0.33
VPS54-203ENST00000409558 FAM20CQ8IXL6 584 aa13□□□□□ -0.33
VPS54-203ENST00000409558 TCEAL8Q8IYN2 117 aa13□□□□□ -0.33
VPS54-203ENST00000409558 MMP21Q8N119 569 aa13□□□□□ -0.33
VPS54-203ENST00000409558 OR2A12Q8NGT7 310 aa13□□□□□ -0.33
VPS54-203ENST00000409558 RERGLQ9H628 205 aa13□□□□□ -0.33
VPS54-203ENST00000409558 IRAK4Q9NWZ3 460 aa13□□□□□ -0.33
VPS54-203ENST00000409558 PDP1Q9P0J1 537 aaPredicted RBP13□□□□□ -0.33
VPS54-203ENST00000409558 RHCGQ9UBD6 479 aa13□□□□□ -0.33
VPS54-203ENST00000409558 RIMKLBQ9ULI2 386 aa13□□□□□ -0.33
VPS54-203ENST00000409558 SAMHD1Q9Y3Z3 626 aaKnown RBP13□□□□□ -0.33
VPS54-203ENST00000409558 FADS2P1A8MWK0 482 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 MYOGP15173 224 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 MAGP20916 626 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 MYF6P23409 242 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 POU1F1P28069 291 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 DOC2AQ14183 400 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 INTS11Q5TA45 600 aaKnown RBP12.99□□□□□ -0.33
VPS54-203ENST00000409558 GPR153Q6NV75 609 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 CEP68Q76N32 757 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 PSD4Q8NDX1 1056 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 ZNF548Q8NEK5 533 aaPredicted RBP12.99□□□□□ -0.33
VPS54-203ENST00000409558 AMBRA1Q9C0C7 1298 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 TRIM39Q9HCM9 518 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 MAP4K5Q9Y4K4 846 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 RTCAO00442 366 aaKnown RBP12.99□□□□□ -0.33
VPS54-203ENST00000409558 LZTS3O60299 673 aaPredicted RBP12.99□□□□□ -0.33
VPS54-203ENST00000409558 EBLN1P0CF75 366 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 TNIP2Q8NFZ5 429 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 FIBINQ8TAL6 211 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 AASDHPPTQ9NRN7 309 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 TDP1Q9NUW8 608 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.99□□□□□ -0.33
VPS54-203ENST00000409558 ARHGEF33A8MVX0 844 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 KPNA5O15131 536 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 INMTO95050 263 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 PRSS23O95084 383 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 FADS2O95864 444 aaKnown RBP12.99□□□□□ -0.33
VPS54-203ENST00000409558 ANXA4P09525 319 aaPredicted RBP12.99□□□□□ -0.33
VPS54-203ENST00000409558 IDH2P48735 452 aaKnown RBP12.99□□□□□ -0.33
VPS54-203ENST00000409558 MASP1P48740 699 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 RPS6KA3P51812 740 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 NUDT6P53370 316 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 CD47Q08722 323 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.99□□□□□ -0.33
VPS54-203ENST00000409558 LHPPQ9H008 270 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 HSFX1Q9UBD0 423 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 SH3GLB1Q9Y371 365 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 SNX5Q9Y5X3 404 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 C16orf96A6NNT2 1141 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 GRM6O15303 877 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 MMP20O60882 483 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 HNRNPCP07910 306 aaKnown RBP eCLIP12.99□□□□□ -0.332e-6■■□□□ 13.6
VPS54-203ENST00000409558 RHOP08100 348 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 AOAHP28039 575 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 TGFBR1P36897 503 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 ALDH3A2P51648 485 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 RPS13P62277 151 aaKnown RBP12.99□□□□□ -0.33
VPS54-203ENST00000409558 RPS26P62854 115 aaKnown RBP12.99□□□□□ -0.33
VPS54-203ENST00000409558 MADCAM1Q13477 382 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 RAPSNQ13702 412 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 MAPK11Q15759 364 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 USP39Q53GS9 565 aaKnown RBP12.99□□□□□ -0.33
VPS54-203ENST00000409558 PERM1Q5SV97 790 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 CNKSR3Q6P9H4 555 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 THOC6Q86W42 341 aaKnown RBP12.99□□□□□ -0.33
VPS54-203ENST00000409558 UHRF1Q96T88 793 aaPredicted RBP12.99□□□□□ -0.33
VPS54-203ENST00000409558 WDR70Q9NW82 654 aa12.99□□□□□ -0.33
VPS54-203ENST00000409558 CD22P20273 847 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 CDK9P50750 372 aaKnown RBP12.98□□□□□ -0.33
VPS54-203ENST00000409558 NKX3-2P78367 333 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 HPCAP84074 193 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 DCTN2Q13561 401 aaKnown RBP12.98□□□□□ -0.33
VPS54-203ENST00000409558 AGTRAPQ6RW13 159 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 Q6ZNB5 142 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 ZNF551Q7Z340 670 aaPredicted RBP12.98□□□□□ -0.33
VPS54-203ENST00000409558 THAP5Q7Z6K1 395 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 CRIPAKQ8N1N5 446 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 UTP15Q8TED0 518 aaKnown RBP12.98□□□□□ -0.33
VPS54-203ENST00000409558 REXO5Q96IC2 774 aaKnown RBP12.98□□□□□ -0.33
VPS54-203ENST00000409558 OSGEPL1Q9H4B0 414 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 SCHIP1Q9P0W5 487 aaPredicted RBP12.98□□□□□ -0.33
VPS54-203ENST00000409558 H3BMQ9 156 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 IL6P05231 212 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 CTU2Q2VPK5 515 aaKnown RBP12.98□□□□□ -0.33
VPS54-203ENST00000409558 ACBD5Q5T8D3 534 aaPredicted RBP12.98□□□□□ -0.33
VPS54-203ENST00000409558 ARL10Q8N8L6 244 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 OVCA2Q8WZ82 227 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 IRF7Q92985 503 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 COG8Q96MW5 612 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 RMND5AQ9H871 391 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 FAM118AQ9NWS6 357 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 CNOT11Q9UKZ1 510 aaKnown RBP12.98□□□□□ -0.33
VPS54-203ENST00000409558 CCL27Q9Y4X3 112 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 YY2O15391 372 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 ALPLP05186 524 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 LAG3P18627 525 aa12.98□□□□□ -0.33
VPS54-203ENST00000409558 CCR3P51677 355 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms