RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 Q96MT0 163 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 CASD1Q96PB1 797 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 MYOCQ99972 504 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 RNF38Q9H0F5 515 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 SPACA6W5XKT8 324 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 TYRP14679 529 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 PNLIPRP1P54315 467 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 SLC30A3Q99726 388 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 AGPAT4Q9NRZ5 378 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 TMEM9Q9P0T7 183 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 EBF1Q9UH73 591 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 SLC9A8Q9Y2E8 581 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 WNT6Q9Y6F9 365 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 TSPAN19P0C672 248 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 GSTM5P46439 218 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 SMIM11AP58511 58 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 GPAT3Q53EU6 434 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 RTN4RL1Q86UN2 441 aaPredicted RBP18.03■□□□□ 0.48
USP48-204ENST00000400301 RAD51AP1Q96B01 352 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 HSH2DQ96JZ2 352 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 FERD3LQ96RJ6 166 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 KAT8Q9H7Z6 458 aaKnown RBP18.03■□□□□ 0.48
USP48-204ENST00000400301 DUS2Q9NX74 493 aaKnown RBP18.03■□□□□ 0.48
USP48-204ENST00000400301 MAP10Q9P2G4 905 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 GULP1Q9UBP9 304 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 SEC14L3Q9UDX4 400 aa18.03■□□□□ 0.48
USP48-204ENST00000400301 ARHGEF9O43307 516 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 FOXD2O60548 495 aaPredicted RBP18.02■□□□□ 0.48
USP48-204ENST00000400301 GBAP04062 536 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 FPR1P21462 350 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 PIGFQ07326 219 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 MYBPC3Q14896 1274 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 LY6G5CQ5SRR4 150 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 PHC3Q8NDX5 983 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 MCMBPQ9BTE3 642 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 VAPAQ9P0L0 249 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 A0A096LPI6 279 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 MMP2P08253 660 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 ZNF30P17039 623 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 GGT1P19440 569 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 MAGP20916 626 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 RPL10P27635 214 aaKnown RBP18.02■□□□□ 0.48
USP48-204ENST00000400301 CD70P32970 193 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 BUD31P41223 144 aaPredicted RBP18.02■□□□□ 0.48
USP48-204ENST00000400301 ARF5P84085 180 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 SYT16Q17RD7 645 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 C6orf141Q5SZD1 244 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 ZNF420Q8TAQ5 688 aaPredicted RBP18.02■□□□□ 0.48
USP48-204ENST00000400301 RDH12Q96NR8 316 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 TDP1Q9NUW8 608 aa18.02■□□□□ 0.48
USP48-204ENST00000400301 FAM120CQ9NX05 1096 aaKnown RBP18.02■□□□□ 0.48
USP48-204ENST00000400301 TRNAU1APQ9NX07 287 aaKnown RBP18.02■□□□□ 0.48
USP48-204ENST00000400301 XPNPEP2O43895 674 aa18.02■□□□□ 0.47
USP48-204ENST00000400301 AIREO43918 545 aa18.02■□□□□ 0.47
USP48-204ENST00000400301 ZNF26P17031 533 aaPredicted RBP18.02■□□□□ 0.47
USP48-204ENST00000400301 WASP42768 502 aa18.02■□□□□ 0.47
USP48-204ENST00000400301 HLCSP50747 726 aa18.02■□□□□ 0.47
USP48-204ENST00000400301 CTSL3PQ5NE16 218 aa18.02■□□□□ 0.47
USP48-204ENST00000400301 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.02■□□□□ 0.473e-7■■■□□ 14.7
USP48-204ENST00000400301 PROKR1Q8TCW9 393 aa18.02■□□□□ 0.47
USP48-204ENST00000400301 SMG7Q92540 1137 aaKnown RBP18.02■□□□□ 0.47
USP48-204ENST00000400301 FNDC11Q9BVV2 318 aa18.02■□□□□ 0.47
USP48-204ENST00000400301 PI15O43692 258 aa18.02■□□□□ 0.47
USP48-204ENST00000400301 PTPN5P54829 565 aa18.02■□□□□ 0.47
USP48-204ENST00000400301 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.02■□□□□ 0.47
USP48-204ENST00000400301 CHERPQ8IWX8 916 aaKnown RBP18.02■□□□□ 0.47
USP48-204ENST00000400301 CHCHD4Q8N4Q1 142 aa18.02■□□□□ 0.47
USP48-204ENST00000400301 OR5AK3PQ8NH89 298 aa18.02■□□□□ 0.47
USP48-204ENST00000400301 EFCAB11Q9BUY7 163 aa18.02■□□□□ 0.47
USP48-204ENST00000400301 TNFRSF12AQ9NP84 129 aa18.02■□□□□ 0.47
USP48-204ENST00000400301 CREBZFQ9NS37 354 aa18.02■□□□□ 0.47
USP48-204ENST00000400301 TARM1B6A8C7 271 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 IFNGR2P38484 337 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 OLR1P78380 273 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 FAM46CQ5VWP2 391 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 ZZZ3Q8IYH5 903 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 SLC34A3Q8N130 599 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 PIH1D2Q8WWB5 315 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 ZNF641Q96N77 438 aaPredicted RBP18.01■□□□□ 0.47
USP48-204ENST00000400301 TRIB3Q96RU7 358 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 IGFLR1Q9H665 355 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 SHROOM3Q8TF72 1996 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 TEX28O15482 410 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 ASNA1O43681 348 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 EPHX1P07099 455 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 ZNF12P17014 697 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 CST5P28325 142 aaPredicted RBP18.01■□□□□ 0.47
USP48-204ENST00000400301 STT3AP46977 705 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 PON2Q15165 354 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 CCDC92Q53HC0 331 aaPredicted RBP18.01■□□□□ 0.47
USP48-204ENST00000400301 OR10G2Q8NGC3 310 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 HDAC2Q92769 488 aaKnown RBP18.01■□□□□ 0.47
USP48-204ENST00000400301 FATE1Q969F0 183 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 RHBDF1Q96CC6 855 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 CHCHD6Q9BRQ6 235 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 CCM2Q9BSQ5 444 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 A0A1W2PRB8 838 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 KLKB1P03952 638 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 PSMD8P48556 350 aa18.01■□□□□ 0.47
USP48-204ENST00000400301 PRMT2P55345 433 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms