RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 CMTM7Q96FZ5 175 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 ZNF285Q96NJ3 590 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 P2RY13Q9BPV8 354 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 METTL8Q9H825 291 aaKnown RBP7.03□□□□□ -1.28
UPF2-203ENST00000397053 LRRC7Q96NW7 1537 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 OTOL1A6NHN0 477 aaPredicted RBP7.03□□□□□ -1.28
UPF2-203ENST00000397053 YJEFN3A6XGL0 299 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 BHMG1C9JSJ3 638 aaPredicted RBP7.03□□□□□ -1.28
UPF2-203ENST00000397053 ACOT7O00154 380 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 CST3P01034 146 aaPredicted RBP7.03□□□□□ -1.28
UPF2-203ENST00000397053 GALTP07902 379 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 PON3Q15166 354 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 PDCD4Q53EL6 469 aaKnown RBP7.03□□□□□ -1.28
UPF2-203ENST00000397053 ARL13AQ5H913 290 aaPredicted RBP7.03□□□□□ -1.28
UPF2-203ENST00000397053 OGFRL1Q5TC84 451 aaPredicted RBP7.03□□□□□ -1.28
UPF2-203ENST00000397053 TMEM151BQ8IW70 566 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 FAM86B1Q8N7N1 296 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 ZNF709Q8N972 641 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 SCAMP5Q8TAC9 235 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 CEP76Q8TAP6 659 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 SNX27Q96L92 541 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 PTCHD1Q96NR3 888 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 AGAP2Q99490 1192 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 SLCO1B3Q9NPD5 702 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 WASF2Q9Y6W5 498 aa7.03□□□□□ -1.28
UPF2-203ENST00000397053 MAGI3Q5TCQ9 1506 aa7.02□□□□□ -1.28
UPF2-203ENST00000397053 CCRL2O00421 344 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 PEX10O60683 326 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 DNAJA2O60884 412 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 UNC5CO95185 931 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 RCBTB2O95199 551 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 KLF8O95600 359 aaPredicted RBP7.02□□□□□ -1.29
UPF2-203ENST00000397053 CLCN4P51793 760 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 RPS3AP61247 264 aaKnown RBP7.02□□□□□ -1.29
UPF2-203ENST00000397053 DPYSQ14117 519 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 CLEC12AQ5QGZ9 265 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 FOXRED2Q8IWF2 684 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 SPERTQ8NA61 448 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 LRRC20Q8TCA0 184 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 FRS2Q8WU20 508 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 TMEM234Q8WY98 164 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 KCTD13Q8WZ19 329 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 TM9SF2Q99805 663 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 P2RX2Q9UBL9 471 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 C15orf41Q9Y2V0 281 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 SNX10Q9Y5X0 201 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 UPK3BL1B0FP48 263 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 PRR5-ARHGAP8B1AHC4 643 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 UPK3BL2E5RIL1 263 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 NPIPA2E9PIF3 369 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 NPIPA3F8WFD2 350 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 STATHP02808 62 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 BCKDHAP12694 445 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 TYRP14679 529 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 RBM34P42696 430 aaKnown RBP7.02□□□□□ -1.29
UPF2-203ENST00000397053 CCNHP51946 323 aaPredicted RBP7.02□□□□□ -1.29
UPF2-203ENST00000397053 DRG2P55039 364 aaKnown RBP7.02□□□□□ -1.29
UPF2-203ENST00000397053 ARHGAP8P85298 464 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 TEAD2Q15562 447 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 LPAL2Q16609 132 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 CCL14Q16627 93 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 PRRT3Q5FWE3 981 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 PITRM1Q5JRX3 1037 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 LY6G5CQ5SRR4 150 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 TMEM63BQ5T3F8 832 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 LRRC55Q6ZSA7 311 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 ZDHHC21Q8IVQ6 265 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 UBQLNLQ8IYU4 475 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 YIPF7Q8N8F6 280 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 OR2T34Q8NGX1 318 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 OR2T3Q8NH03 318 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 THEM6Q8WUY1 208 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 UFD1Q92890 307 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 SMARCD2Q92925 531 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 TMEM41AQ96HV5 264 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 CIB1Q99828 191 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 SGIP1Q9BQI5 828 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 CCM2Q9BSQ5 444 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 RTKNQ9BST9 563 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 MUC13Q9H3R2 512 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 ACSS2Q9NR19 701 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 VPS29Q9UBQ0 182 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 BLOC1S5-TXNDC5H3BN57 136 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 GRID2O43424 1007 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 LRCH4O75427 683 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 KRT36O76013 467 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 TGDSO95455 350 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 VNN2O95498 520 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 POLR2CP19387 275 aaPredicted RBP7.02□□□□□ -1.29
UPF2-203ENST00000397053 VAMP1P23763 118 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 NRLP54845 237 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 MPP2Q14168 576 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 RCAN2Q14206 197 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 ZNF792Q3KQV3 632 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 PLEKHG6Q3KR16 790 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 GTF2IRD2BQ6EKJ0 949 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 EIF5AL1Q6IS14 154 aaKnown RBP7.02□□□□□ -1.29
UPF2-203ENST00000397053 TATDN1Q6P1N9 297 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 SPATC1Q76KD6 591 aa7.02□□□□□ -1.29
UPF2-203ENST00000397053 GTF2IRD2Q86UP8 949 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms