RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 MSANTD2Q6P1R3 559 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 TMEM126BQ8IUX1 230 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 UBE2J2Q8N2K1 259 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 ZFAND2BQ8WV99 257 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 ZSWIM3Q96MP5 696 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 ITPAQ9BY32 194 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 FLRT1Q9NZU1 646 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 MEMO1Q9Y316 297 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 PRKAB1Q9Y478 270 aa10.03□□□□□ -0.8
LIMCH1-203ENST00000396595 A0A1W2PRB8 838 aa10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 NFATC1O95644 943 aa10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 PLATP00750 562 aa10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 EFNA1P20827 205 aaPredicted RBP10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 SP3Q02447 781 aa10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 MOGQ16653 247 aa10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 WDR45BQ5MNZ6 344 aa10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 TMEM220Q6QAJ8 160 aa10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 KLHL36Q8N4N3 616 aa10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 CNDP2Q96KP4 475 aaKnown RBP10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 GPR22Q99680 433 aa10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 MIPEPQ99797 713 aa10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 OSBPL2Q9H1P3 480 aa10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 RC3H2Q9HBD1 1191 aaKnown RBP10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 MALT1Q9UDY8 824 aa10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 UBQLN2Q9UHD9 624 aa10.02□□□□□ -0.8
LIMCH1-203ENST00000396595 CLIC1O00299 241 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 GRIA1P42261 906 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 XKP51811 444 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 SLC10A7Q0GE19 358 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 WSCD2Q2TBF2 565 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 FUT10Q6P4F1 479 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ZC3HC1Q86WB0 502 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 CCDC71Q8IV32 467 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 CLIP4Q8N3C7 705 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 CLEC4CQ8WTT0 213 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 C2orf15Q8WU43 125 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ACOT12Q8WYK0 555 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 EXO5Q9H790 373 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ZBTB26Q9HCK0 441 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 AMBNQ9NP70 447 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 SLC17A6Q9P2U8 582 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 FBXW2Q9UKT8 454 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ERVW-1Q9UQF0 538 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 KLRG2A4D1S0 409 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ECI2O75521 394 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 IL7RP16871 459 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 AKT2P31751 481 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 SH3D19Q5HYK7 790 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 CRB2Q5IJ48 1285 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 TPRG1LQ5T0D9 272 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 LINGO2Q7L985 606 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ADGRG6Q86SQ4 1221 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 TRPM4Q8TD43 1214 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 CD300LFQ8TDQ1 290 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 GEMIN6Q8WXD5 167 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 FBXL18Q96ME1 805 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 EFCAB11Q9BUY7 163 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 IFT27Q9BW83 186 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 CD84Q9UIB8 345 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ARL5AQ9Y689 179 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 APODP05090 189 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ALPPP05187 535 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 CHRM5P08912 532 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 SLC2A2P11168 524 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 CD79BP40259 229 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 GRK6P43250 576 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 SLC15A1P46059 708 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 RPA4Q13156 261 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ZNF829Q3KNS6 432 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ENDOVQ8N8Q3 282 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ZNF516Q92618 1163 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 PRICKLE1Q96MT3 831 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 SLC29A3Q9BZD2 475 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 USP29Q9HBJ7 922 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 MTMR10Q9NXD2 777 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 FKBP7Q9Y680 259 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ARL5CA6NH57 179 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 TSTD3H0UI37 97 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 CAPN15O75808 1086 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 GATBO75879 557 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 SIX3O95343 332 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 HLA-DQB2P05538 268 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 GSTM3P21266 225 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 PRKCHP24723 683 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 RYKP34925 604 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 TSPAN5P62079 268 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 VARS2Q5ST30 1063 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 UBXN11Q5T124 520 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 EIF5AL1Q6IS14 154 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 TNFAIP8L2Q6P589 184 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 CPA6Q8N4T0 437 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ZNF366Q8N895 744 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 OR13C4Q8NGS5 318 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 KLHL6Q8WZ60 621 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ZNF514Q96K75 400 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 MTERF1Q99551 399 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 VPS29Q9UBQ0 182 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 ZDHHC2Q9UIJ5 367 aa10.02□□□□□ -0.81
LIMCH1-203ENST00000396595 SELPP16109 830 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms