RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 C10orf142B7Z368 130 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 MANBAO00462 879 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 SORBS2O94875 1100 aaKnown RBP17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 STAMBPO95630 424 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 CAPNS1P04632 268 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 JUPP14923 745 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 GPX3P22352 226 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 CLDN2P57739 230 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 CTBSQ01459 385 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 FOXM1Q08050 763 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 KRT33BQ14525 404 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 XKR6Q5GH73 641 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 XKR5Q6UX68 686 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 GCNT7Q6ZNI0 430 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 DCBLD1Q8N8Z6 715 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 TMEM145Q8NBT3 493 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 ICA1LQ8NDH6 482 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 ZNF480Q8WV37 535 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 CLDN23Q96B33 292 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 C3orf30Q96M34 536 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 HAUS8Q9BT25 410 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 C6orf106Q9H6K1 298 aaPredicted RBP17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 MVB12BQ9H7P6 319 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 FGF22Q9HCT0 170 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 TM7SF3Q9NS93 570 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 CNOT11Q9UKZ1 510 aaKnown RBP17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 RNF11Q9Y3C5 154 aa17.63■□□□□ 0.41
CCDC88C-203ENST00000389856 PDZK1P1A8MUH7 402 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 C8BP07358 591 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 PRR35P0CG20 571 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 NDUFS1P28331 727 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 CHIT1Q13231 466 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 FZD5Q13467 585 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 MED21Q13503 144 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 NR6A1Q15406 480 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 PAGE2BQ5JRK9 111 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 TRIM46Q7Z4K8 759 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 ABI3BPQ7Z7G0 1075 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 DCP2Q8IU60 420 aaKnown RBP17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 RGL4Q8IZJ4 473 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 FAM9CQ8IZT9 166 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 GOLM1Q8NBJ4 401 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 HIPK4Q8NE63 616 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 BHLHE22Q8NFJ8 381 aaPredicted RBP17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 PJA1Q8NG27 643 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 USP7Q93009 1102 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 SPACA7Q96KW9 195 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 BMFQ96LC9 184 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 GPR174Q9BXC1 333 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 ADA2Q9NZK5 511 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 ZNF490Q9ULM2 529 aaPredicted RBP17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 DTNAQ9Y4J8 743 aa17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 PCYT1BQ9Y5K3 369 aaPredicted RBP17.62■□□□□ 0.41
CCDC88C-203ENST00000389856 PRSS51A0A1B0GVH4 220 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 H0YJX3 145 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 FBP2O00757 339 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 IGHV4-34P06331 123 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 DPP6P42658 865 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 TBPL1P62380 186 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 LAPTM5Q13571 262 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 CPSF6Q16630 551 aaKnown RBP eCLIP17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 UAP1L1Q3KQV9 507 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 CCSMST1Q4G0I0 132 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 GRHL2Q6ISB3 625 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 WASH2PQ6VEQ5 465 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 EFCAB3Q8N7B9 438 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 SELENOMQ8WWX9 145 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 C12orf66Q96MD2 445 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 FERD3LQ96RJ6 166 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 EFCAB11Q9BUY7 163 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 SGPP1Q9BX95 441 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 EHD1Q9H4M9 534 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 WASH6PQ9NQA3 447 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 SDR39U1Q9NRG7 319 aaPredicted RBP17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 INTS7Q9NVH2 962 aaKnown RBP17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 GID8Q9NWU2 228 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 TRNAU1APQ9NX07 287 aaKnown RBP17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 CCDC167Q9P0B6 97 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 TMEM181Q9P2C4 612 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 KCNK6Q9Y257 313 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 TDRKHQ9Y2W6 561 aaKnown RBP17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 COLEC10Q9Y6Z7 277 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 IGHV1OR15-9A0A0B4J2B8 117 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 SERTM1A2A2V5 107 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 CD1EP15812 388 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 EPORP19235 508 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 PEX2P28328 305 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 CASP2P42575 452 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 SRP54P61011 504 aaKnown RBP17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 EMX2Q04743 252 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 GAS6Q14393 721 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 HIST2H2ACQ16777 129 aaPredicted RBP17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 THEMIS2Q5TEJ8 643 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 FRG2Q64ET8 278 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 HIST2H2AA3Q6FI13 130 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 Q6ZSR6 202 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 FNDC5Q8NAU1 212 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 SPDYE1Q8NFV5 336 aaPredicted RBP17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 CADM4Q8NFZ8 388 aa17.61■□□□□ 0.41
CCDC88C-203ENST00000389856 OR5AR1Q8NGP9 310 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms