RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 ZER1Q7Z7L7 766 aa8.56□□□□□ -1.04
LIG3-202ENST00000378526 VWA5B2Q8N398 1253 aa8.56□□□□□ -1.04
LIG3-202ENST00000378526 EFCAB3Q8N7B9 438 aa8.56□□□□□ -1.04
LIG3-202ENST00000378526 KCT2Q8NC54 265 aa8.56□□□□□ -1.04
LIG3-202ENST00000378526 ZNF596Q8TC21 504 aa8.56□□□□□ -1.04
LIG3-202ENST00000378526 ACSF2Q96CM8 615 aaPredicted RBP8.56□□□□□ -1.04
LIG3-202ENST00000378526 POLR1EQ9GZS1 481 aaKnown RBP8.56□□□□□ -1.04
LIG3-202ENST00000378526 PCED1AQ9H1Q7 454 aa8.56□□□□□ -1.04
LIG3-202ENST00000378526 OR2S2Q9NQN1 319 aa8.56□□□□□ -1.04
LIG3-202ENST00000378526 NPIPA1Q9UND3 350 aa8.56□□□□□ -1.04
LIG3-202ENST00000378526 B3GNT3Q9Y2A9 372 aa8.56□□□□□ -1.04
LIG3-202ENST00000378526 UGT2A1Q9Y4X1 527 aa8.56□□□□□ -1.04
LIG3-202ENST00000378526 HNF1BP35680 557 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 CLCN4P51793 760 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 PPATQ06203 517 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 DPY19L1Q2PZI1 675 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 CDKAL1Q5VV42 579 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 PRSS55Q6UWB4 352 aaPredicted RBP8.55□□□□□ -1.04
LIG3-202ENST00000378526 GK5Q6ZS86 529 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 BEND4Q6ZU67 534 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 FBXO44Q9H4M3 255 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 CNOT6Q9ULM6 557 aaKnown RBP8.55□□□□□ -1.04
LIG3-202ENST00000378526 NUBP2Q9Y5Y2 271 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 KDM5CP41229 1560 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 PP2D1A8MPX8 630 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 USP17L15C9J2P7 530 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 USP17L13C9JLJ4 530 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 USP17L11C9JVI0 530 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 USP17L18D6R9N7 530 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 USP17L22D6RA61 530 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 USP17L17D6RBQ6 530 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 USP17L19D6RCP7 530 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 USP17L20D6RJB6 530 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 PSMD9O00233 223 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 FLRT2O43155 660 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 ONECUT3O60422 494 aaPredicted RBP8.55□□□□□ -1.04
LIG3-202ENST00000378526 MT-ND5P03915 603 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 RHOCP08134 193 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 USP17L24Q0WX57 530 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 USP17L6PQ6QN14 398 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 GPAT4Q86UL3 456 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 CUZD1Q86UP6 607 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 ZNF561Q8N587 486 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 CADM1Q9BY67 442 aaKnown RBP8.55□□□□□ -1.04
LIG3-202ENST00000378526 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.55□□□□□ -1.04
LIG3-202ENST00000378526 SNX15Q9NRS6 342 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 LIN7CQ9NUP9 197 aaKnown RBP8.55□□□□□ -1.04
LIG3-202ENST00000378526 ABCB8Q9NUT2 735 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 PRORSD1PA6NEY8 169 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 NAP1L6A6NFF2 107 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 USP17L5A8MUK1 530 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 CSF2P04141 144 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 ADH1AP07327 375 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 IRF1P10914 325 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 FOXM1Q08050 763 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 RAB39AQ14964 217 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 TBC1D25Q3MII6 688 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 ESCO2Q56NI9 601 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 IER5Q5VY09 327 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 XKR5Q6UX68 686 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 ZNF571Q7Z3V5 609 aaPredicted RBP8.55□□□□□ -1.04
LIG3-202ENST00000378526 FTMTQ8N4E7 242 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 RNF128Q8TEB7 428 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 GEMIN6Q8WXD5 167 aaKnown RBP8.55□□□□□ -1.04
LIG3-202ENST00000378526 BSCL2Q96G97 398 aaPredicted RBP8.55□□□□□ -1.04
LIG3-202ENST00000378526 IL26Q9NPH9 171 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 TXNL4BQ9NX01 149 aaKnown RBP8.55□□□□□ -1.04
LIG3-202ENST00000378526 SMPD4Q9NXE4 827 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 FETUBQ9UGM5 382 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 EXOSC1Q9Y3B2 195 aaKnown RBP8.55□□□□□ -1.04
LIG3-202ENST00000378526 CACNA1CQ13936 2221 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 A0A0A6YYH2 397 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 A6NJ64 397 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 CXCR6O00574 342 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 NDUFB10O96000 172 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 S100A7P31151 101 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 MAPK8P45983 427 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 LHX1P48742 406 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 SCNN1DP51172 638 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 ELP5Q8TE02 316 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 BORCS8Q96FH0 119 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 HS6ST2Q96MM7 605 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 CPXM1Q96SM3 734 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 H3BUI4 141 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 CD47Q08722 323 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 TARDBPQ13148 414 aaKnown RBP eCLIP8.55□□□□□ -1.04
LIG3-202ENST00000378526 ACSBG2Q5FVE4 666 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 LYRM7Q5U5X0 104 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 NAT16Q8N8M0 369 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 PMEPA1Q969W9 287 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 POLR2J3Q9H1A7 115 aaKnown RBP8.55□□□□□ -1.04
LIG3-202ENST00000378526 VPS28Q9UK41 221 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 ASPAP45381 313 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 GRIK2Q13002 908 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 CHRFAM7AQ494W8 412 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 TMEM104Q8NE00 496 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 NINJ1Q92982 152 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 C12orf57Q99622 126 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 MRI1Q9BV20 369 aa8.55□□□□□ -1.04
LIG3-202ENST00000378526 KCNK13Q9HB14 408 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms