RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 CRYMQ14894 314 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 NADK2Q4G0N4 442 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 FBXO42Q6P3S6 717 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 SUSD1Q6UWL2 747 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 COX15Q7KZN9 410 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 PPP1R32Q7Z5V6 425 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 PCGF5Q86SE9 256 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 CD200R1Q8TD46 325 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 ASB11Q8WXH4 323 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 SMAD5Q99717 465 aaKnown RBP20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 ZFYVE21Q9BQ24 234 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 AARSD1Q9BTE6 412 aaKnown RBP20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 SLC26A1Q9H2B4 701 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 WDR54Q9H977 334 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 SLC6A20Q9NP91 592 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 MRPS30Q9NP92 439 aaKnown RBP20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 IARS2Q9NSE4 1012 aaKnown RBP20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 P4HTMQ9NXG6 502 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 GPR83Q9NYM4 423 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 ANKMY1Q9P2S6 941 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 ASH1LQ9NR48 2969 aaKnown RBP20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 LOC105369274A0A096LPK9 316 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 LOC102723532A0A0G2JNH3 316 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 HYKKA2RU49 373 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 USP27XA6NNY8 438 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 GFYI3L273 518 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 TTC4O95801 387 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 SLC16A8O95907 504 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 IVDP26440 423 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 RPA3P35244 121 aaPredicted RBP20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 CD97P48960 835 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 NKG7Q16617 165 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 DCAF10Q5QP82 559 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 OR4N4Q8N0Y3 316 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 C2CD4AQ8NCU7 369 aaPredicted RBP20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 ZNF480Q8WV37 535 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 ZDHHC19Q8WVZ1 309 aaPredicted RBP20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 NACC2Q96BF6 587 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 EBNA1BP2Q99848 306 aaKnown RBP20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 PLCD4Q9BRC7 762 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 NBASA2RRP1 2371 aa20.75■□□□□ 0.91
CCDC28B-201ENST00000373602 E7ENX8 843 aa20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 EIF3FO00303 357 aaPredicted RBP20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 DPM1O60762 260 aa20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 VPS26AO75436 327 aa20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 BANF1O75531 89 aa20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 UBR5O95071 2799 aaPredicted RBP20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 MED26O95402 600 aa20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 OR1D4P47884 311 aa20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 TAP2Q03519 686 aa20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 PRDX1Q06830 199 aaKnown RBP20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 PCM1Q15154 2024 aa20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 MSS51Q4VC12 460 aa20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 ICE2Q659A1 982 aa20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 CLEC1AQ8NC01 280 aa20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 SPSB2Q99619 263 aa20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 NAT9Q9BTE0 207 aa20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 ZC3H7BQ9UGR2 993 aaKnown RBP20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 TAC3Q9UHF0 121 aa20.74■□□□□ 0.91
CCDC28B-201ENST00000373602 IGKV1-8A0A0C4DH67 115 aa20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 TTLL8A6PVC2 850 aa20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 ZBTB14O43829 449 aa20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 SORBS2O94875 1100 aaKnown RBP20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 CCNDBP1O95273 360 aa20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 ERVK-10P10266 1014 aa20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 MMP11P24347 488 aa20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 SKIV2L2P42285 1042 aaKnown RBP20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 TSTA3Q13630 321 aaPredicted RBP20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 SPANXN3Q5MJ09 141 aa20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 ZNF425Q6IV72 752 aa20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 PAQR7Q86WK9 346 aa20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 LRRC56Q8IYG6 542 aaPredicted RBP20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 CPNE9Q8IYJ1 553 aa20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 GALNT16Q8N428 558 aa20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 DTWD1Q8N5C7 304 aa20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 METTL27Q8N6F8 245 aaPredicted RBP20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 PPFIBP2Q8ND30 876 aa20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 C5AR2Q9P296 337 aa20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 NXT1Q9UKK6 140 aaKnown RBP20.73■□□□□ 0.91
CCDC28B-201ENST00000373602 VSTM2BA6NLU5 285 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 H0YGG7 62 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 AGPSO00116 658 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 SYF2O95926 243 aaKnown RBP20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 EIF2S1P05198 315 aaKnown RBP20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 GABRB3P28472 473 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 EMP3P54852 163 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 SOX8P57073 446 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 ARF3P61204 181 aaPredicted RBP20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 TIAL1Q01085 375 aaKnown RBP eCLIP20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 RAPSNQ13702 412 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 PRTGQ2VWP7 1150 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 VWA5B1Q5TIE3 1220 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 PRMT9Q6P2P2 845 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 SYDE1Q6ZW31 735 aaPredicted RBP20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 UBE2R2Q712K3 238 aaPredicted RBP20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 PIWIL4Q7Z3Z4 852 aaKnown RBP20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 ATCAYQ86WG3 371 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 CREG2Q8IUH2 290 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 IGDCC3Q8IVU1 814 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 CNTN4Q8IWV2 1026 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms