RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TMEM165Q9HC07 324 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 SIX4Q9UIU6 781 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 HS3ST4Q9Y661 456 aa11.16□□□□□ -0.62
PTPRF-203ENST00000372407 PRAMEF33A0A0G2JMD5 474 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 A0A0U1RQF3 1178 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 M0QX08 132 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 PRAMEF10O60809 474 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 S100A6P06703 90 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 ACVRL1P37023 503 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 DNASE1L1P49184 302 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 XKP51811 444 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 DSTNP60981 165 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 CHRNA6Q15825 494 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 CCL14Q16627 93 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 NAPRTQ6XQN6 538 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 GET4Q7L5D6 327 aaPredicted RBP11.15□□□□□ -0.62
PTPRF-203ENST00000372407 ADGRG6Q86SQ4 1221 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 C7orf61Q8IZ16 206 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 CLDN19Q8N6F1 224 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 OR4F6Q8NGB9 312 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 OR2AP1Q8NGE2 309 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 HERVK_113Q902F9 699 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 PIGKQ92643 395 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 CYP2S1Q96SQ9 504 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 DPEP2Q9H4A9 486 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 TCF7L1Q9HCS4 588 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 SLC22A14Q9Y267 594 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 TMED5Q9Y3A6 229 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 PSAT1Q9Y617 370 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 GMEB1Q9Y692 573 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 PRRC2BQ5JSZ5 2229 aaKnown RBP11.15□□□□□ -0.62
PTPRF-203ENST00000372407 LRRC72A6NJI9 287 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 NRP1O14786 923 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 ALPPP05187 535 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 ALAS2P22557 587 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 STC1P52823 247 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 UFM1P61960 85 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 GANABQ14697 944 aaKnown RBP11.15□□□□□ -0.62
PTPRF-203ENST00000372407 SPIN4Q56A73 249 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 PDSS2Q86YH6 399 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 WFIKKN2Q8TEU8 576 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 KLHL6Q8WZ60 621 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 KCTD7Q96MP8 289 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 SLC35A5Q9BS91 424 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 DERL2Q9GZP9 239 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 COMMD4Q9H0A8 199 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 PCDHGB7Q9Y5F8 929 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.15□□□□□ -0.62
PTPRF-203ENST00000372407 FAM189A1O60320 539 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 F7P08709 466 aaPredicted RBP11.15□□□□□ -0.62
PTPRF-203ENST00000372407 MPP2Q14168 576 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 RABL3Q5HYI8 236 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 LRRC73Q5JTD7 316 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 LMO3Q8TAP4 145 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 GPR151Q8TDV0 419 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 METTL21AQ8WXB1 218 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 SEC14L1Q92503 715 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 BIRC7Q96CA5 298 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 TAPBPLQ9BX59 468 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 SLC28A3Q9HAS3 691 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 MALT1Q9UDY8 824 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 TBC1D24Q9ULP9 559 aa11.15□□□□□ -0.62
PTPRF-203ENST00000372407 USP54Q70EL1 1684 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 THSD7AQ9UPZ6 1657 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 SNED1Q8TER0 1413 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 ANXA2P2A6NMY6 339 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 RFPL1O75677 317 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 NPPAP01160 153 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 H1F0P07305 194 aaKnown RBP11.15□□□□□ -0.63
PTPRF-203ENST00000372407 ANXA2P07355 339 aaKnown RBP11.15□□□□□ -0.63
PTPRF-203ENST00000372407 ALPIP09923 528 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 CCL5P13501 91 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 ATF6P18850 670 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 GSTM3P21266 225 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 ITGA3P26006 1051 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 PPP3R1P63098 170 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 ADAM8P78325 824 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 CDK6Q00534 326 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 EMX2Q04743 252 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 SPATS1Q496A3 300 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 COLEC12Q5KU26 742 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 VITQ6UXI7 678 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 CAND1Q86VP6 1230 aaKnown RBP11.15□□□□□ -0.63
PTPRF-203ENST00000372407 CILP2Q8IUL8 1156 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 IGDCC3Q8IVU1 814 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 CLIP4Q8N3C7 705 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 ENDOVQ8N8Q3 282 aaKnown RBP11.15□□□□□ -0.63
PTPRF-203ENST00000372407 TSPEARQ8WU66 669 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 CNDP2Q96KP4 475 aaKnown RBP11.15□□□□□ -0.63
PTPRF-203ENST00000372407 SRMSQ9H3Y6 488 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 TXNRD2Q9NNW7 524 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 ZDHHC4Q9NPG8 344 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 RIMKLBQ9ULI2 386 aa11.15□□□□□ -0.63
PTPRF-203ENST00000372407 LOC730098B7Z3J9 87 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 ATP6V1G1O75348 118 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 CREG1O75629 220 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 OPN1SWP03999 348 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 CASP9P55211 416 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 TSPAN5P62079 268 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 CBLBQ13191 982 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms