RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SLC6A11P48066 632 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 DGKGP49619 791 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 TMEM115Q12893 351 aaPredicted RBP10.03□□□□□ -0.8
LIMA1-201ENST00000341247 CAMK1Q14012 370 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 DHCR24Q15392 516 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 GPR107Q5VW38 600 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 FAM180BQ6P0A1 224 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 NECAB2Q7Z6G3 386 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 TMPRSS11BQ86T26 416 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 CFAP206Q8IYR0 622 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 NXPE3Q969Y0 559 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 MYOCQ99972 504 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 CEP44Q9C0F1 390 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 OR2AG1Q9H205 316 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 SGK2Q9HBY8 427 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 PTTG2Q9NZH5 202 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 BTBD3Q9Y2F9 522 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 INSL6Q9Y581 213 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 A0A087WXM4 84 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 MAGEB17A8MXT2 336 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 GFYI3L273 518 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 TRMUO75648 421 aaKnown RBP10.03□□□□□ -0.8
LIMA1-201ENST00000341247 THRBP10828 461 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 CYP4B1P13584 511 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 PIGAP37287 484 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 PMS2P3Q13401 168 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 DAG1Q14118 895 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 ZNF77Q15935 545 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 HKDC1Q2TB90 917 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 IER5LQ5T953 404 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 PATL1Q86TB9 770 aaKnown RBP10.03□□□□□ -0.8
LIMA1-201ENST00000341247 GOLM1Q8NBJ4 401 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 SH3KBP1Q96B97 665 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 SAMD11Q96NU1 681 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 OR4K3Q96R72 315 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 NAA50Q9GZZ1 169 aaKnown RBP10.03□□□□□ -0.8
LIMA1-201ENST00000341247 RMND5AQ9H871 391 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 ATG2BQ96BY7 2078 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 H0Y858 1186 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 FPGTO14772 594 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 TULP3O75386 442 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 LAMP1P11279 417 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 PTPN5P54829 565 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 ESRRGP62508 458 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 CTBSQ01459 385 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 ACSM2AQ08AH3 577 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 SPATS1Q496A3 300 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 PLEKHS1Q5SXH7 462 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 HENMT1Q5T8I9 393 aaKnown RBP10.03□□□□□ -0.8
LIMA1-201ENST00000341247 IRAK1BP1Q5VVH5 260 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 ACSM2BQ68CK6 577 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 LIPIQ6XZB0 460 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 VTCN1Q7Z7D3 282 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 C1orf52Q8N6N3 182 aaKnown RBP10.03□□□□□ -0.8
LIMA1-201ENST00000341247 BTN2A2Q8WVV5 523 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 GLYATL1Q969I3 302 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 CPPED1Q9BRF8 314 aaPredicted RBP10.03□□□□□ -0.8
LIMA1-201ENST00000341247 ACAT2Q9BWD1 397 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 SH3BP4Q9P0V3 963 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 STOX2Q9P2F5 926 aaPredicted RBP10.03□□□□□ -0.8
LIMA1-201ENST00000341247 IFT80Q9P2H3 777 aaPredicted RBP10.03□□□□□ -0.8
LIMA1-201ENST00000341247 ERVK-11Q9UQG0 969 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 HELZP42694 1942 aaKnown RBP10.02□□□□□ -0.8
LIMA1-201ENST00000341247 GNG14A0A1W2PPG7 69 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 YY2O15391 372 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 MITFO75030 526 aaPredicted RBP10.02□□□□□ -0.81
LIMA1-201ENST00000341247 FTH1P02794 183 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 ENGP17813 658 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 PFKLP17858 780 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 HNMTP50135 292 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 ALDH3A2P51648 485 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 ST8SIA6P61647 398 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 ZNF805Q5CZA5 627 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 KCTD8Q6ZWB6 473 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 TRMT11Q7Z4G4 463 aaKnown RBP10.02□□□□□ -0.81
LIMA1-201ENST00000341247 CMTM7Q96FZ5 175 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 PKP4Q99569 1192 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 BARD1Q99728 777 aaKnown RBP10.02□□□□□ -0.81
LIMA1-201ENST00000341247 IL23AQ9NPF7 189 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 PLAGL1Q9UM63 463 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 OTOL1A6NHN0 477 aaPredicted RBP10.02□□□□□ -0.81
LIMA1-201ENST00000341247 MMP20O60882 483 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 ALPLP05186 524 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 JUPP14923 745 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 ZNF30P17039 623 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 NR4A1P22736 598 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 ALDH3B2P48448 385 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 MEP1AQ16819 746 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 UGT8Q16880 541 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 CATSPEREQ5SY80 951 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 RAET1GQ6H3X3 334 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 TNIP2Q8NFZ5 429 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 VN1R2Q8NFZ6 395 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 SPPL3Q8TCT6 385 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 HM13Q8TCT9 377 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 RSPRY1Q96DX4 576 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 SH3GL1Q99961 368 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 KCNH6Q9H252 994 aa10.02□□□□□ -0.81
LIMA1-201ENST00000341247 THG1LQ9NWX6 298 aaKnown RBP10.02□□□□□ -0.81
LIMA1-201ENST00000341247 VPS29Q9UBQ0 182 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms