RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 PRSS51A0A1B0GVH4 220 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 DHRS4L1P0CG22 281 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 CD52P31358 61 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 TARDBPQ13148 414 aaKnown RBP eCLIP10.04□□□□□ -0.84e-6■■■■□ 19.5
CCDC88A-202ENST00000336838 SIRPB2Q5JXA9 342 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 PLEKHS1Q5SXH7 462 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 SCIMPQ6UWF3 145 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 TMEM17Q86X19 198 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 BIRC7Q96CA5 298 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 KCNH6Q9H252 994 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 TOR3AQ9H497 397 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 OXSR1O95747 527 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 MYCP01106 439 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 LGI4Q8N135 537 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 ZNF548Q8NEK5 533 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 PSMG2Q969U7 264 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 CITED4Q96RK1 184 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.04□□□□□ -0.81e-7■■■□□ 16
CCDC88A-202ENST00000336838 PCDHGA2Q9Y5H1 932 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 PAPPAQ13219 1627 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 CXorf49A8MYA2 514 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 PCDH7O60245 1069 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 APOC1P02654 83 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 NELFEP18615 380 aaKnown RBP10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 PTGS2P35354 604 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 MSS51Q4VC12 460 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 CXCL17Q6UXB2 119 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 RNF44Q7L0R7 432 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 NPAS4Q8IUM7 802 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 CENPSQ8N2Z9 138 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 PHTF2Q8N3S3 785 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 SETD6Q8TBK2 473 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 ARID1BQ8NFD5 2236 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 KLRG2A4D1S0 409 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 HRH2P25021 359 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 KLHL26Q53HC5 615 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 BLOC1S3Q6QNY0 202 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 EGFL6Q8IUX8 553 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 PYROXD2Q8N2H3 581 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 CDKN2AIPNLQ96HQ2 116 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 MCMBPQ9BTE3 642 aa10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 GLIS2Q9BZE0 524 aaPredicted RBP10.04□□□□□ -0.8
CCDC88A-202ENST00000336838 ENDOUP21128 410 aaKnown RBP10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 RASGEF1BQ0VAM2 473 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 CCNIQ14094 377 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 ZNF678Q5SXM1 525 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 SIDT2Q8NBJ9 832 aaKnown RBP10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 KLHL5Q96PQ7 755 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 ARFGEF1Q9Y6D6 1849 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 H3BSA7 217 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 GLUD1P00367 558 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 CTSEP14091 401 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 IST1P53990 364 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 MYBPC1Q00872 1141 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 BEX3Q00994 111 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 GPR153Q6NV75 609 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 C15orf39Q6ZRI6 1047 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 C11orf16Q9NQ32 467 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 MTMR10Q9NXD2 777 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 DSTNP60981 165 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 ELOAQ14241 798 aaKnown RBP10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 TREML2Q5T2D2 321 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 OLFML2AQ68BL7 652 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 CLCC1Q96S66 551 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 CMAHPQ9Y471 501 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 ASB4Q9Y574 426 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 PQBP1O60828 265 aaKnown RBP10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 RB1P06400 928 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 WSCD2Q2TBF2 565 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 SLC36A4Q6YBV0 504 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 ABHD13Q7L211 337 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 CHERPQ8IWX8 916 aaKnown RBP10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 PCDHAC1Q9H158 963 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 RBBP6Q7Z6E9 1792 aaKnown RBP10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 ANKRD66B4E2M5 251 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 WEE1P30291 646 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 IGFALSP35858 605 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 SUOXP51687 545 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 PTGR1Q14914 329 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 DNM1P34Q6PK57 102 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 TIGD4Q8IY51 512 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 GPR65Q8IYL9 337 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 PQLC3Q8N755 202 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 CLHC1Q8NHS4 586 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 DNASE1L2Q92874 299 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 ZNF432O94892 652 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 ABATP80404 500 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 SLC39A4Q6P5W5 647 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 TSPYL5Q86VY4 417 aaPredicted RBP10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 MRI1Q9BV20 369 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 CST11Q9H112 138 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 WNT9AO14904 365 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 CNTN5O94779 1100 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 MLLT6P55198 1093 aaPredicted RBP10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 RAB39AQ14964 217 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 CRB2Q5IJ48 1285 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 FAM117BQ6P1L5 589 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 LRRN1Q6UXK5 716 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 FZD4Q9ULV1 537 aa10.03□□□□□ -0.8
CCDC88A-202ENST00000336838 MRPS23Q9Y3D9 190 aaKnown RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms