RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 CCDC177Q9NQR7 707 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-201ENST00000332345 ABCF3Q9NUQ8 709 aa13.46□□□□□ -0.25
LIMS1-201ENST00000332345 STOX2Q9P2F5 926 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-201ENST00000332345 CTNNAL1Q9UBT7 734 aa13.46□□□□□ -0.25
LIMS1-201ENST00000332345 KCND3Q9UK17 655 aa13.46□□□□□ -0.25
LIMS1-201ENST00000332345 NFU1Q9UMS0 254 aa13.46□□□□□ -0.25
LIMS1-201ENST00000332345 C21orf140B9A014 251 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 MEN1O00255 615 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 ZNF500O60304 480 aaPredicted RBP13.45□□□□□ -0.26
LIMS1-201ENST00000332345 FAM155BO75949 473 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 ACSL3O95573 720 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 CCDC166P0CW27 439 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 PYGBP11216 843 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 CRABP2P29373 138 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 ECHS1P30084 290 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 DLSTP36957 453 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 RAB10P61026 200 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 MC1RQ01726 317 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 SRSF6Q13247 344 aaKnown RBP13.45□□□□□ -0.26
LIMS1-201ENST00000332345 NAE1Q13564 534 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 ZNF460Q14592 562 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 PHKG1Q16816 387 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 DEFB110Q30KQ9 67 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 PRAMEF17Q5VTA0 474 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 AGTRAPQ6RW13 159 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 RAPH1Q70E73 1250 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 LRRC56Q8IYG6 542 aaPredicted RBP13.45□□□□□ -0.26
LIMS1-201ENST00000332345 SLC38A9Q8NBW4 561 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 MR1Q95460 341 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 MED8Q96G25 268 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 SLC45A3Q96JT2 553 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 DPH2Q9BQC3 489 aaPredicted RBP13.45□□□□□ -0.26
LIMS1-201ENST00000332345 PLCD4Q9BRC7 762 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 NDC1Q9BTX1 674 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 GPR87Q9BY21 358 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 FUT8Q9BYC5 575 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 FAM117AQ9C073 453 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 DERL2Q9GZP9 239 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 ACSS3Q9H6R3 686 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 CAB39LQ9H9S4 337 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 TAC3Q9UHF0 121 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 CROTQ9UKG9 612 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 SRPK3Q9UPE1 567 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 IKBKGQ9Y6K9 419 aa13.45□□□□□ -0.26
LIMS1-201ENST00000332345 OR2A25A4D2G3 310 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 ZNF891A8MT65 544 aaPredicted RBP13.44□□□□□ -0.26
LIMS1-201ENST00000332345 CDC7O00311 574 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 ZSCAN9O15535 394 aaPredicted RBP13.44□□□□□ -0.26
LIMS1-201ENST00000332345 HCRTR1O43613 425 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 GUCA1CO95843 209 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 AGXTP21549 392 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 ARSFP54793 590 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 ATP6V0D1P61421 351 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 RPS15P62841 145 aaKnown RBP13.44□□□□□ -0.26
LIMS1-201ENST00000332345 RHDQ02161 417 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 RELAQ04206 551 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 CAPN13Q6MZZ7 669 aaPredicted RBP13.44□□□□□ -0.26
LIMS1-201ENST00000332345 FBXO42Q6P3S6 717 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 SBSNQ6UWP8 590 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 FRA10AC1Q70Z53 315 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 CCDC91Q7Z6B0 441 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 ADAMTSL2Q86TH1 951 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 DSELQ8IZU8 1212 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 ZNF655Q8N720 491 aaPredicted RBP13.44□□□□□ -0.26
LIMS1-201ENST00000332345 EIF1ADQ8N9N8 165 aaKnown RBP13.44□□□□□ -0.26
LIMS1-201ENST00000332345 ANKRD49Q8WVL7 239 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 FBXL8Q96CD0 374 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 MRRFQ96E11 262 aaKnown RBP13.44□□□□□ -0.26
LIMS1-201ENST00000332345 SELENOSQ9BQE4 189 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 HAUS8Q9BT25 410 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 ATG10Q9H0Y0 220 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 TXLNGQ9NUQ3 528 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 TMEM184CQ9NVA4 438 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 PCDHGA4Q9Y5G9 962 aa13.44□□□□□ -0.26
LIMS1-201ENST00000332345 A0A087WUV0 522 aaPredicted RBP13.43□□□□□ -0.26
LIMS1-201ENST00000332345 A0A0J9YVX5 310 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 H3BMH7 237 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 PHGDHO43175 533 aaKnown RBP13.43□□□□□ -0.26
LIMS1-201ENST00000332345 CTSVO60911 334 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 KATNA1O75449 491 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 INHBAP08476 426 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 ANXA5P08758 320 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 RORAP35398 523 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 HNMTP50135 292 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 TBPL1P62380 186 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 YBX1P67809 324 aaKnown RBP13.43□□□□□ -0.26
LIMS1-201ENST00000332345 CDKL1Q00532 357 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 GPS2Q13227 327 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 DNASE1L3Q13609 305 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 GRM7Q14831 915 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 EFTUD2Q15029 972 aaKnown RBP eCLIP13.43□□□□□ -0.26
LIMS1-201ENST00000332345 ZKSCAN8Q15776 578 aaPredicted RBP13.43□□□□□ -0.26
LIMS1-201ENST00000332345 UAP1Q16222 522 aaPredicted RBP13.43□□□□□ -0.26
LIMS1-201ENST00000332345 FAM214AQ32MH5 1076 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 MROH9Q5TGP6 573 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 YOD1Q5VVQ6 348 aaPredicted RBP13.43□□□□□ -0.26
LIMS1-201ENST00000332345 PRAMEF13Q5VWM6 474 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 RHBDD2Q6NTF9 364 aa13.43□□□□□ -0.26
LIMS1-201ENST00000332345 FAM199XQ6PEV8 388 aaPredicted RBP13.43□□□□□ -0.26
LIMS1-201ENST00000332345 ZNF517Q6ZMY9 492 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms