RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 ARPINQ7Z6K5 226 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 PATL1Q86TB9 770 aaKnown RBP12.37□□□□□ -0.43
DDX39A-202ENST00000324340 C1orf210Q8IVY1 113 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 DCUN1D3Q8IWE4 304 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 TBC1D21Q8IYX1 336 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 RGL4Q8IZJ4 473 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 DEFB119Q8N690 84 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 TMEM105Q8N8V8 129 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 OR56A3Q8NH54 315 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 OR5K2Q8NHB8 316 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 TSACCQ96A04 125 aaPredicted RBP12.37□□□□□ -0.43
DDX39A-202ENST00000324340 RAD51AP1Q96B01 352 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 NMD3Q96D46 503 aaKnown RBP12.37□□□□□ -0.43
DDX39A-202ENST00000324340 FAR2Q96K12 515 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 LRGUKQ96M69 825 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 HGH1Q9BTY7 390 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 TNFRSF12AQ9NP84 129 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 SEMA4BQ9NPR2 832 aaPredicted RBP12.37□□□□□ -0.43
DDX39A-202ENST00000324340 AASDHPPTQ9NRN7 309 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 DNAJC28Q9NX36 388 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 STOX2Q9P2F5 926 aaPredicted RBP12.37□□□□□ -0.43
DDX39A-202ENST00000324340 OPTCQ9UBM4 332 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 CNOT11Q9UKZ1 510 aaKnown RBP12.37□□□□□ -0.43
DDX39A-202ENST00000324340 ASF1AQ9Y294 204 aa12.37□□□□□ -0.43
DDX39A-202ENST00000324340 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 OR7A17O14581 309 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 RASGRP1O95267 797 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 ESRRBO95718 433 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 SLC16A8O95907 504 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 TNFP01375 233 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 CAPNS1P04632 268 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 ERGP11308 486 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 ZNF24P17028 368 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 TSPAN8P19075 237 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 RPL10P27635 214 aaKnown RBP12.36□□□□□ -0.43
DDX39A-202ENST00000324340 IMPA1P29218 277 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 GDF5P43026 501 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 FNTBP49356 437 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 MTTPP55157 894 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 CTBSQ01459 385 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 FOLH1Q04609 750 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 PTCHD3Q3KNS1 767 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 UGT3A2Q3SY77 523 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 KANK2Q63ZY3 851 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 ZFP1Q6P2D0 407 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 AGTRAPQ6RW13 159 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 C11orf74Q86VG3 221 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 PARGQ86W56 976 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 TMEFF1Q8IYR6 380 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 CLYBLQ8N0X4 340 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 CHCHD4Q8N4Q1 142 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 ADCY4Q8NFM4 1077 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 OR9A1PQ8NGU1 263 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 GPBAR1Q8TDU6 330 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 NELL1Q92832 810 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 INSM2Q96T92 566 aaPredicted RBP12.36□□□□□ -0.43
DDX39A-202ENST00000324340 CCDC106Q9BWC9 280 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 SHCBP1LQ9BZQ2 653 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 TMEM168Q9H0V1 697 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 OSGEPL1Q9H4B0 414 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 TM9SF3Q9HD45 589 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 PALMDQ9NP74 551 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 MID1IP1Q9NPA3 183 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 SCHIP1Q9P0W5 487 aaPredicted RBP12.36□□□□□ -0.43
DDX39A-202ENST00000324340 ZNF225Q9UK10 706 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 FBXO4Q9UKT5 387 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 PSMD13Q9UNM6 376 aa12.36□□□□□ -0.43
DDX39A-202ENST00000324340 ANKRD12Q6UB98 2062 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 A0A088AWK7 358 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 A0A1B0GTL3 188 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 KRT87PA6NCN2 255 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 A6NCN8 305 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 TLR4O00206 839 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 KATNA1O75449 491 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 PDE5AO76074 875 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 OTCP00480 354 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 ETS2P15036 469 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 EPB42P16452 691 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 EPORP19235 508 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 MAOBP27338 520 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 CDK9P50750 372 aaKnown RBP12.35□□□□□ -0.43
DDX39A-202ENST00000324340 BLKP51451 505 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 AQP5P55064 265 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 TUBA4AP68366 448 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 PCDH1Q08174 1060 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 TRAF3Q13114 568 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 ARHGAP19Q14CB8 494 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 CLCA4Q14CN2 919 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 SFT2D3Q587I9 215 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 WDR45BQ5MNZ6 344 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 EPGNQ6UW88 154 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 LPCAT2Q7L5N7 544 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 RD3Q7Z3Z2 195 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 BMP8AQ7Z5Y6 402 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 SYVN1Q86TM6 617 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 NRROSQ86YC3 692 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 HID1Q8IV36 788 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 LRRC56Q8IYG6 542 aaPredicted RBP12.35□□□□□ -0.43
DDX39A-202ENST00000324340 AFAP1L2Q8N4X5 818 aa12.35□□□□□ -0.43
DDX39A-202ENST00000324340 OR52B6Q8NGF0 335 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms