RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 DUSP6Q16828 381 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 C5orf22Q49AR2 442 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 CHST9Q7L1S5 443 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 DENND6AQ8IWF6 608 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 CHDHQ8NE62 594 aaPredicted RBP10.63□□□□□ -0.71
LSM3-201ENST00000306024 IRF7Q92985 503 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 CCNB1IP1Q9NPC3 277 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 POLR3BQ9NW08 1133 aaPredicted RBP10.63□□□□□ -0.71
LSM3-201ENST00000306024 CCDC59Q9P031 241 aaKnown RBP10.63□□□□□ -0.71
LSM3-201ENST00000306024 SNX6Q9UNH7 406 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 CCL26Q9Y258 94 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 C5orf67F2Z3F1 127 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 OR7A10O76100 309 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 KCNK2O95069 426 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 NMBRP28336 390 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 HOXA9P31269 272 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 NPY2RP49146 381 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 TAS2R39P59534 338 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 CDC20Q12834 499 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 SERINC3Q13530 473 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 STARD3Q14849 445 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 QPRTQ15274 297 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 RBBP7Q16576 425 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 NOXA1Q86UR1 476 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 TMEM25Q86YD3 366 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 STX19Q8N4C7 294 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 ANKK1Q8NFD2 765 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 FGF13Q92913 245 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 SMARCD2Q92925 531 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 WBP2Q969T9 261 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 GDF15Q99988 308 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 ADGRE3Q9BY15 652 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 SLC25A51Q9H1U9 297 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 RERGLQ9H628 205 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 ERVK13-1Q9NX77 482 aa10.63□□□□□ -0.71
LSM3-201ENST00000306024 AGAP5A6NIR3 686 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 MT-ND2P03891 347 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 HSD17B1P14061 328 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 CCR2P41597 374 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 ADARB1P78563 741 aaKnown RBP10.62□□□□□ -0.71
LSM3-201ENST00000306024 BCL2L1Q07817 233 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 FNDC3BQ53EP0 1204 aaKnown RBP10.62□□□□□ -0.71
LSM3-201ENST00000306024 XAF1Q6GPH4 301 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 TBPL2Q6SJ96 375 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 LACC1Q8IV20 430 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 MFSD4AQ8N468 514 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 LSMEM1Q8N8F7 131 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 ACVR1CQ8NER5 493 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 RTP4Q96DX8 246 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 TBATAQ96M53 351 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 TRNT1Q96Q11 434 aaKnown RBP10.62□□□□□ -0.71
LSM3-201ENST00000306024 TNKS2Q9H2K2 1166 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 SDK1Q7Z5N4 2213 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 H3BQ06 376 aaPredicted RBP10.62□□□□□ -0.71
LSM3-201ENST00000306024 PDPK1O15530 556 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 MAFKO60675 156 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 TULP3O75386 442 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 MTRF1O75570 445 aaKnown RBP10.62□□□□□ -0.71
LSM3-201ENST00000306024 GABARAPO95166 117 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 PRAMEF12O95522 483 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 ZNF682O95780 498 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 AP2A1O95782 977 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 CCNYL3P0C7X3 344 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 HOXB8P17481 243 aaPredicted RBP10.62□□□□□ -0.71
LSM3-201ENST00000306024 IMPDH1P20839 514 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 IL32P24001 234 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 IGFBP5P24593 272 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 GABARAPL2P60520 117 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 GTF2IRD2BQ6EKJ0 949 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.62□□□□□ -0.71
LSM3-201ENST00000306024 ZNF438Q7Z4V0 828 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 GTF2IRD2Q86UP8 949 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 CACUL1Q86Y37 369 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 HIPK1Q86Z02 1210 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 DTX3Q8N9I9 347 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 TSGA13Q96PP4 275 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 TRIM54Q9BYV2 358 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 ACTR8Q9H981 624 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 ANKHQ9HCJ1 492 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 FBXO8Q9NRD0 319 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 NUFIP1Q9UHK0 495 aaKnown RBP10.62□□□□□ -0.71
LSM3-201ENST00000306024 A0A087X1B8 175 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 HEPACAM2A8MVW5 462 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 SUPT3HB4E1H0 165 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 LATS1O95835 1130 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 SLC6A2P23975 617 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 GDI1P31150 447 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 MAGEA6P43360 314 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 DGKGP49619 791 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 SNRPD1P62314 119 aaKnown RBP10.62□□□□□ -0.71
LSM3-201ENST00000306024 MLLT1Q03111 559 aaPredicted RBP10.62□□□□□ -0.71
LSM3-201ENST00000306024 ACOX1Q15067 660 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 FXNQ16595 210 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 BTBD16Q32M84 506 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 RFX4Q33E94 735 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 SULT1C3Q6IMI6 304 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 HACD2Q6Y1H2 254 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 RETREG3Q86VR2 466 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 ARHGAP12Q8IWW6 846 aa10.62□□□□□ -0.71
LSM3-201ENST00000306024 PHC2Q8IXK0 858 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms