RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 LRRC14BA6NHZ5 514 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 I3L521 148 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 HLA-DPB1P04440 258 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 EBLN1P0CF75 366 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 STOMP27105 288 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 ATP13A5Q4VNC0 1218 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 SPANXN4Q5MJ08 99 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 FAM91A1Q658Y4 838 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 HMX1Q9NP08 348 aaPredicted RBP12.54□□□□□ -0.4
COL3A1-201ENST00000304636 FKBP7Q9Y680 259 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 LTN1O94822 1766 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 NT5C1B-RDH14C9J2C7 533 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 ADH1AP07327 375 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 RIPPLY1Q0D2K3 151 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 CES5AQ6NT32 575 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 SMARCD3Q6STE5 483 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 NCSTNQ92542 709 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 PIGKQ92643 395 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 TMEM203Q969S6 136 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 C12orf42Q96LP6 360 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 OR2B2Q9GZK3 357 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 TMEM39AQ9NV64 488 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 PCDHGB1Q9Y5G3 927 aa12.54□□□□□ -0.4
COL3A1-201ENST00000304636 TRBC2A0A5B9 178 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 XKRYO14609 159 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 PRAMEF12O95522 483 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 CBSLP0DN79 551 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 AMD1P17707 334 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 CBSP35520 551 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 SMSP52788 366 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 EIPR1Q53HC9 387 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 ANKRD13BQ86YJ7 626 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 TRPM4Q8TD43 1214 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 ZNF431Q8TF32 576 aaPredicted RBP12.53□□□□□ -0.4
COL3A1-201ENST00000304636 RNF31Q96EP0 1072 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 AHCYL2Q96HN2 611 aaKnown RBP12.53□□□□□ -0.4
COL3A1-201ENST00000304636 MCCC1Q96RQ3 725 aaPredicted RBP12.53□□□□□ -0.4
COL3A1-201ENST00000304636 COMMD4Q9H0A8 199 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 OR51V1Q9H2C8 321 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 TCF7L1Q9HCS4 588 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 SMOXQ9NWM0 555 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 PAK1IP1Q9NWT1 392 aaPredicted RBP12.53□□□□□ -0.4
COL3A1-201ENST00000304636 GIMAP2Q9UG22 337 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 MRTO4Q9UKD2 239 aaKnown RBP12.53□□□□□ -0.4
COL3A1-201ENST00000304636 PCDHGB7Q9Y5F8 929 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 ANXA2P2A6NMY6 339 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 PI15O43692 258 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 ANXA2P07355 339 aaKnown RBP12.53□□□□□ -0.4
COL3A1-201ENST00000304636 HTR1BP28222 390 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 AP1S2P56377 157 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 TECRLQ5HYJ1 363 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 HFE2Q6ZVN8 426 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 ZNF563Q8TA94 476 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 IFT27Q9BW83 186 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 SOCS2O14508 198 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 ENPP3O14638 875 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 OR1F1O43749 312 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 DFNA5O60443 496 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 SCN2BO60939 215 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 SNAPC5O75971 98 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 OPN1SWP03999 348 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 ALPPP05187 535 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 PRKAR2AP13861 404 aaKnown RBP12.53□□□□□ -0.4
COL3A1-201ENST00000304636 NIPAL4Q0D2K0 466 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 NRG4Q8WWG1 115 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 CACNB4O00305 520 aaPredicted RBP12.53□□□□□ -0.4
COL3A1-201ENST00000304636 DHRS4L1P0CG22 281 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 ITGA3P26006 1051 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 RFC2P35250 354 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 ZNF367Q7RTV3 350 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 SLC15A3Q8IY34 581 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 C2orf15Q8WU43 125 aaKnown RBP12.53□□□□□ -0.4
COL3A1-201ENST00000304636 CNDP2Q96KP4 475 aaKnown RBP12.53□□□□□ -0.4
COL3A1-201ENST00000304636 ZDHHC3Q9NYG2 299 aa12.53□□□□□ -0.4
COL3A1-201ENST00000304636 UBR1Q8IWV7 1749 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 LOC730098B7Z3J9 87 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 J3KR12 359 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 DCLK1O15075 740 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 GSTM2P28161 218 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 DIO3P55073 304 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 GNG2P59768 71 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 TBRG1Q3YBR2 411 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 ATXN7L2Q5T6C5 722 aaPredicted RBP12.52□□□□□ -0.4
COL3A1-201ENST00000304636 ATG9BQ674R7 924 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 KIAA1161Q6NSJ0 714 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 CADM2Q8N3J6 435 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 FIBCD1Q8N539 461 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 AQP11Q8NBQ7 271 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 EFCAB11Q9BUY7 163 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 TPT1P8Q9HAU6 139 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 SOHLH2Q9NX45 425 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 MARK1Q9P0L2 795 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 SIX4Q9UIU6 781 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 HSPB11Q9Y547 144 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 CDK6Q00534 326 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 GRB14Q14449 540 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 ANKDD1AQ495B1 522 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 TIGD5Q53EQ6 642 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 TMEM220Q6QAJ8 160 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 PTF1AQ7RTS3 328 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms