RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 ZNF821O75541 412 aaPredicted RBP23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 COL6A1P12109 1028 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 LHCGRP22888 699 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 LRIF1Q5T3J3 769 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 OR2T5Q6IEZ7 315 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 OR2T29Q8NH02 315 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 BTBD3Q9Y2F9 522 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 CLIC1O00299 241 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 FPGTO14772 594 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 ITIH1P19827 911 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 GABARAPL2P60520 117 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 ATG16L2Q8NAA4 619 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 KLHL23Q8NBE8 558 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 HJURPQ8NCD3 748 aaPredicted RBP23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 REXO5Q96IC2 774 aaKnown RBP23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 TRIT1Q9H3H1 467 aaKnown RBP23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 RMND5AQ9H871 391 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 M0R3G1 203 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 NTRK1P04629 796 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 CDH3P22223 829 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 OCA2Q04671 838 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 LMAN2Q12907 356 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 TTLL9Q3SXZ7 439 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 SHQ1Q6PI26 577 aaKnown RBP23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 ANKRD13BQ86YJ7 626 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 DCAF4L2Q8NA75 395 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 ZNF461Q8TAF7 563 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 COPS8Q99627 209 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 INIPQ9NRY2 104 aa23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 SAMHD1Q9Y3Z3 626 aaKnown RBP23.69■■□□□ 1.38
SPTSSA-201ENST00000298130 CLDN25C9JDP6 229 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 SLC16A6O15403 523 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 LCKP06239 509 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 PORP16435 677 aaPredicted RBP23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 HPCAL1P37235 193 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 KIR3DL1P43629 444 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 RETSATQ6NUM9 610 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 CYP2U1Q7Z449 544 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 CCDC71Q8IV32 467 aaPredicted RBP23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 RBM12BQ8IXT5 1001 aaKnown RBP23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 TTC29Q8NA56 475 aaPredicted RBP23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 TAMM41Q96BW9 452 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 PMF1-BGLAPU3KQ54 211 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 NRG2O14511 850 aaPredicted RBP23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 TNFRSF1BP20333 461 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 ABHD18Q0P651 414 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 SPOUT1Q5T280 376 aaKnown RBP23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 NOXRED1Q6NXP6 359 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 AHSA2Q719I0 299 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 SYT12Q8IV01 421 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 BBS7Q8IWZ6 715 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 LMNTD1Q8N9Z9 388 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 HSH2DQ96JZ2 352 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 C2orf49Q9BVC5 232 aaPredicted RBP23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 KCTD5Q9NXV2 234 aa23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 DNMT3BQ9UBC3 853 aaKnown RBP23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 ABT1Q9ULW3 272 aaKnown RBP23.68■■□□□ 1.38
SPTSSA-201ENST00000298130 GREM1O60565 184 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 NSG1P42857 185 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 PTSQ03393 145 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 CHIT1Q13231 466 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.67■■□□□ 1.382e-7■■■□□ 17.6
SPTSSA-201ENST00000298130 HORMAD1Q86X24 394 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 UBTD2Q8WUN7 234 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 PPP1R14BQ96C90 147 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 ALPK1Q96QP1 1244 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 ZNF347Q96SE7 839 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 EVPLLA8MZ36 301 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 WNT9AO14904 365 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 AOAHP28039 575 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 HOXA9P31269 272 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 CA8P35219 290 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 MAGEA10P43363 369 aaPredicted RBP23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 SYT16Q17RD7 645 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 SCAMP4Q969E2 229 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 ZNF641Q96N77 438 aaPredicted RBP23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 MAGIXQ9H6Y5 334 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 KIF17Q9P2E2 1029 aa23.67■■□□□ 1.38
SPTSSA-201ENST00000298130 FAM20BO75063 409 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 KCNK5O95279 499 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 HOXB9P17482 250 aaPredicted RBP23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 RYKP34925 604 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 UGT8Q16880 541 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 ZBTB8BQ8NAP8 495 aaPredicted RBP23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 ATP13A3Q9H7F0 1226 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 IL1RAPQ9NPH3 570 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 TMPRSS11EQ9UL52 423 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 SNX6Q9UNH7 406 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 KCNE1BA0A087WTH5 132 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 KRBA1A5PL33 1030 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 SERPINB7O75635 380 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 VIPP01282 170 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 ABCB1P08183 1280 aaPredicted RBP23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 HIST1H2AGP0C0S8 130 aaPredicted RBP23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 AMD1P17707 334 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 HIST1H2ADP20671 130 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 TOP3AQ13472 1001 aaPredicted RBP23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 CYP27C1Q4G0S4 372 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 HS6ST3Q8IZP7 471 aa23.66■■□□□ 1.38
SPTSSA-201ENST00000298130 SH3KBP1Q96B97 665 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms