RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 NPIPB8E9PQR5 432 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 IFRD1O00458 451 aaPredicted RBP13.81□□□□□ -0.2
C9orf3-202ENST00000297979 B3GALNT1O75752 331 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 RPN2P04844 631 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 SLC34A1Q06495 639 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 FOXM1Q08050 763 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 DMPKQ09013 629 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 FLOT2Q14254 428 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 SKIV2LQ15477 1246 aaKnown RBP13.81□□□□□ -0.2
C9orf3-202ENST00000297979 LIX1Q8N485 282 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 MINDY1Q8N5J2 469 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 HIPK4Q8NE63 616 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 OR5AR1Q8NGP9 310 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 RAD51AP1Q96B01 352 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 CMTM7Q96FZ5 175 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 UHRF1Q96T88 793 aaPredicted RBP13.81□□□□□ -0.2
C9orf3-202ENST00000297979 OSBPL10Q9BXB5 764 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 IL1RL2Q9HB29 575 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 SUCOQ9UBS9 1254 aaKnown RBP13.81□□□□□ -0.2
C9orf3-202ENST00000297979 BCAP29Q9UHQ4 241 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 ANGPTL2Q9UKU9 493 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 SLC17A4Q9Y2C5 497 aa13.81□□□□□ -0.2
C9orf3-202ENST00000297979 TCRBV21S2A2A0A5A6 115 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 FXYD1O00168 92 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 SLC31A1O15431 190 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 SLC35G4P0C7Q5 338 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 KELP23276 732 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 SLC7A2P52569 658 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 PNLIPRP1P54315 467 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 CSTF3Q12996 717 aaKnown RBP13.8□□□□□ -0.2
C9orf3-202ENST00000297979 KIAA0040Q15053 153 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 CCDC85BQ15834 202 aaPredicted RBP13.8□□□□□ -0.2
C9orf3-202ENST00000297979 SAMD4BQ5PRF9 694 aaKnown RBP13.8□□□□□ -0.2
C9orf3-202ENST00000297979 CHST15Q7LFX5 561 aaPredicted RBP13.8□□□□□ -0.2
C9orf3-202ENST00000297979 GALNT13Q8IUC8 556 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 WDR20Q8TBZ3 569 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 LRRC58Q96CX6 371 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 ZBTB18Q99592 522 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 MYOCQ99972 504 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 TIMM29Q9BSF4 260 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 APOOQ9BUR5 198 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 S100A14Q9HCY8 104 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 ACSL5Q9ULC5 683 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 DYRK1BQ9Y463 629 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 H0YIV9 168 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 CACNB4O00305 520 aaPredicted RBP13.8□□□□□ -0.2
C9orf3-202ENST00000297979 ANP32DO95626 131 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 CEACAM5P06731 702 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 ACP5P13686 325 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 CASP2P42575 452 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 PTDSS1P48651 473 aaKnown RBP13.8□□□□□ -0.2
C9orf3-202ENST00000297979 TAP2Q03519 686 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 TSTA3Q13630 321 aaPredicted RBP13.8□□□□□ -0.2
C9orf3-202ENST00000297979 NFYCQ13952 458 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 PTGR1Q14914 329 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 LRRC56Q8IYG6 542 aaPredicted RBP13.8□□□□□ -0.2
C9orf3-202ENST00000297979 FAM81AQ8TBF8 368 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 NEIL2Q969S2 332 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 LRCH3Q96II8 777 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 EBF2Q9HAK2 575 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 CD93Q9NPY3 652 aa13.8□□□□□ -0.2
C9orf3-202ENST00000297979 CCDC177Q9NQR7 707 aaPredicted RBP13.8□□□□□ -0.2
C9orf3-202ENST00000297979 FUCA1P04066 466 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 TCN1P20061 433 aaPredicted RBP13.79□□□□□ -0.2
C9orf3-202ENST00000297979 VARSP26640 1264 aaKnown RBP13.79□□□□□ -0.2
C9orf3-202ENST00000297979 MSX2P35548 267 aaPredicted RBP13.79□□□□□ -0.2
C9orf3-202ENST00000297979 E2F2Q14209 437 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 TLR1Q15399 786 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 USP39Q53GS9 565 aaKnown RBP13.79□□□□□ -0.2
C9orf3-202ENST00000297979 SLCO4C1Q6ZQN7 724 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 TMPRSS11BQ86T26 416 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.79□□□□□ -0.2
C9orf3-202ENST00000297979 OR5K2Q8NHB8 316 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 PYDC1Q8WXC3 89 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 SLC35B4Q969S0 331 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 ASB9Q96DX5 294 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 DPY30Q9C005 99 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 ABCD2Q9UBJ2 740 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 CD300AQ9UGN4 299 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 MCM8Q9UJA3 840 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 TMED5Q9Y3A6 229 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 PCDHGA11Q9Y5H2 935 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 KANSL1LA0AUZ9 987 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 PRORSD1PA6NEY8 169 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 BCAS2O75934 225 aaPredicted RBP13.79□□□□□ -0.2
C9orf3-202ENST00000297979 SRFP11831 508 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 ANPEPP15144 967 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 NPPBP16860 134 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 CD72P21854 359 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 MAPK1P28482 360 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 TPMTP51580 245 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 CLCNKAP51800 687 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 MS4A2Q01362 244 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 PAGE3Q5JUK9 113 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 SUSD1Q6UWL2 747 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 FAM156AQ8NDB6 213 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 FAM117AQ9C073 453 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 SGK2Q9HBY8 427 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 SLC2A4RGQ9NR83 387 aa13.79□□□□□ -0.2
C9orf3-202ENST00000297979 TDRKHQ9Y2W6 561 aaKnown RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms