RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PLA2G15Q8NCC3 412 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 IL12RB2Q99665 862 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 MANSC4A6NHS7 340 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 F8VP50 259 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 RNASEH2AO75792 299 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 SHBGP04278 402 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 DPP6P42658 865 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 TMEM69Q5SWH9 247 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 CHST9Q7L1S5 443 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 FCRL2Q96LA5 508 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 TTYH2Q9BSA4 534 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 ZDHHC9Q9Y397 364 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 NME7Q9Y5B8 376 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 SNX10Q9Y5X0 201 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 F5H0A9 414 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 SCAMP3O14828 347 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 ARP10275 920 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 SLC6A6P31641 620 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 OC90Q02509 493 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 DCLRE1AQ6PJP8 1040 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 ADAM2Q99965 735 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 DNMT3AQ9Y6K1 912 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 GOT1P17174 413 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 KLF10Q13118 480 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 RNF220Q5VTB9 566 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 SPATA6LQ8N4H0 392 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 TOR1AIP2Q8NFQ8 470 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 TM9SF4Q92544 642 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 TMEM185BQ9H7F4 350 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 CHST7Q9NS84 486 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 TMX2Q9Y320 296 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 BOLA2-SMG1P6H3BVE0 249 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 UGT1A9O60656 530 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 NFATC1O95644 943 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 CD3GP09693 182 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 UGT1A6P19224 532 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 UGT1A1P22309 533 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 UGT1A4P22310 534 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 PTPN20Q4JDL3 420 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 GPRC6AQ5T6X5 926 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 SNX29P2Q8IUI4 249 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 GOLM1Q8NBJ4 401 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 UGT1A7Q9HAW7 530 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 UGT1A10Q9HAW8 530 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 UGT1A8Q9HAW9 530 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 PNO1Q9NRX1 252 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 ASB6Q9NWX5 421 aa13.63□□□□□ -0.23
CCDC88A-201ENST00000263630 TEX51A0A1B0GUA7 166 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 GMDSO60547 372 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 AGO3Q9H9G7 860 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 PEX12O00623 359 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 MFSD11O43934 449 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 ATP6V1G1O75348 118 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 ATE1O95260 518 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 PSMD8P48556 350 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 SP2Q02086 613 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 FOXM1Q08050 763 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 NIPAL4Q0D2K0 466 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 UAP1L1Q3KQV9 507 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 KIAA1161Q6NSJ0 714 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 TMPPEQ6ZT21 453 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 KCNJ9Q92806 393 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 WACQ9BTA9 647 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF705FA8MVS1 300 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 VILLO15195 856 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 INMTO95050 263 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF705DP0CH99 300 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF705BP0CI00 300 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 BTN2A3PQ96KV6 586 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 SNRNP25Q9BV90 132 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 NLGN3Q9NZ94 848 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 GRHPRQ9UBQ7 328 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 FXYD6P3P58550 94 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 NKAPLQ5M9Q1 402 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 MLIPQ5VWP3 458 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 VRK1Q99986 396 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 TIGARQ9NQ88 270 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 DPPA5A6NC42 116 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 BUD23O43709 281 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 BRINP1O60477 761 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 LYPLA1O75608 230 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 VEGFCP49767 419 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 PPP5CP53041 499 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF616Q08AN1 781 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 PSRC1Q6PGN9 363 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 PEX13Q92968 403 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 IPPKQ9H8X2 491 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 PNPOQ9NVS9 261 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 TREHO43280 583 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 MT-ND2P03891 347 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 EIF2B1Q14232 305 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 NIPAL1Q6NVV3 410 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 CREG2Q8IUH2 290 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 OR2B2Q9GZK3 357 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 FZD3Q9NPG1 666 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 A0A0G2JLW4 131 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 ARGFXA6NJG6 315 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 PI15O43692 258 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 MT-ND5P03915 603 aa13.62□□□□□ -0.23
CCDC88A-201ENST00000263630 LY6KQ17RY6 165 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms