RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TRNAU1APQ9NX07 287 aaKnown RBP18.68■□□□□ 0.58
UPF1-201ENST00000262803 VIRMAQ69YN4 1812 aaKnown RBP18.68■□□□□ 0.58
UPF1-201ENST00000262803 PEAK1Q9H792 1746 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 SIX3O95343 332 aaPredicted RBP18.68■□□□□ 0.58
UPF1-201ENST00000262803 F7P08709 466 aaPredicted RBP18.68■□□□□ 0.58
UPF1-201ENST00000262803 XRCC1P18887 633 aaPredicted RBP18.68■□□□□ 0.58
UPF1-201ENST00000262803 PLGLB1Q02325 96 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 KLHL36Q8N4N3 616 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 TMEM209Q96SK2 561 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 NOX1Q9Y5S8 564 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 A8MT66 165 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 EI24O14681 340 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 PPEF2O14830 753 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 AIREO43918 545 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 RLN2P04090 185 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 CKMT2P17540 419 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 NFKB2Q00653 900 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 RIPPLY1Q0D2K3 151 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 OLFML1Q6UWY5 402 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 SLITRK4Q8IW52 837 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 GEMIN6Q8WXD5 167 aaKnown RBP18.68■□□□□ 0.58
UPF1-201ENST00000262803 YTHDF1Q9BYJ9 559 aaKnown RBP18.68■□□□□ 0.58
UPF1-201ENST00000262803 ABCB9Q9NP78 766 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 CLDND1Q9NY35 253 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 IQCMA0A1B0GVH7 501 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 ATP1B2P14415 290 aaPredicted RBP18.67■□□□□ 0.58
UPF1-201ENST00000262803 CTSOP43234 321 aaPredicted RBP18.67■□□□□ 0.58
UPF1-201ENST00000262803 DSTNP60981 165 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 MYLK3Q32MK0 819 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 PACRGLQ8N7B6 248 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 DCAF4L2Q8NA75 395 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 DNAJA4Q8WW22 397 aaPredicted RBP18.67■□□□□ 0.58
UPF1-201ENST00000262803 MNTQ99583 582 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 SLC39A3Q9BRY0 314 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 CD320Q9NPF0 282 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 KAT7O95251 611 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 SLC18A2Q05940 514 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 SLBPQ14493 270 aaKnown RBP eCLIP18.67■□□□□ 0.58
UPF1-201ENST00000262803 TOP1MTQ969P6 601 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 ASB9Q96DX5 294 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 SP140LQ9H930 580 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 FBXO9Q9UK97 447 aaPredicted RBP18.67■□□□□ 0.58
UPF1-201ENST00000262803 DLG5Q8TDM6 1919 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 TBX18O95935 607 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 RPLP0P05388 317 aaKnown RBP18.67■□□□□ 0.58
UPF1-201ENST00000262803 MTHFD1P11586 935 aaKnown RBP18.67■□□□□ 0.58
UPF1-201ENST00000262803 SLC10A7Q0GE19 358 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 LRRC15Q8TF66 581 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 SLC35F5Q8WV83 523 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 KIAA1143Q96AT1 154 aaPredicted RBP18.67■□□□□ 0.58
UPF1-201ENST00000262803 ZNF570Q96NI8 536 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 STRADBQ9C0K7 418 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 TDP1Q9NUW8 608 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 A0A1W2PRU2 124 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 ZNF487B1APH4 448 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 SCDO00767 359 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 SNAPC5O75971 98 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 MTTPP55157 894 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 ENPP2Q13822 863 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 ARSIQ5FYB1 569 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 TPRG1Q6ZUI0 275 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 USP30Q70CQ3 517 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 CCDC107Q8WV48 283 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 RAB7BQ96AH8 199 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 LRIG1Q96JA1 1093 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 ZNF717Q9BY31 904 aaPredicted RBP18.67■□□□□ 0.58
UPF1-201ENST00000262803 PHF24Q9UPV7 400 aa18.67■□□□□ 0.58
UPF1-201ENST00000262803 NOBOXO60393 691 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 CDH1P12830 882 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 MAT2AP31153 395 aaKnown RBP18.66■□□□□ 0.58
UPF1-201ENST00000262803 PGDP52209 483 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 PLA2G16P53816 162 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 RPS24P62847 133 aaKnown RBP18.66■□□□□ 0.58
UPF1-201ENST00000262803 ADAM8P78325 824 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 GPR17Q13304 367 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 DECR1Q16698 335 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 HMGB4Q8WW32 186 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 GTPBP3Q969Y2 492 aaKnown RBP18.66■□□□□ 0.58
UPF1-201ENST00000262803 PPM1HQ9ULR3 514 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 TMA7Q9Y2S6 64 aaKnown RBP18.66■□□□□ 0.58
UPF1-201ENST00000262803 NFS1Q9Y697 457 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 DAPL1A0PJW8 107 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 NIPSNAP2O75323 286 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 DCKP27707 260 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 TSPAN5P62079 268 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 GSTM4Q03013 218 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 SLC9A4Q6AI14 798 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 TESCQ96BS2 214 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 RIOK2Q9BVS4 552 aaKnown RBP18.66■□□□□ 0.58
UPF1-201ENST00000262803 POPDC3Q9HBV1 291 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 FLRT1Q9NZU1 646 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 KDM4FA0A1W2PPD8 638 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 CLDN25C9JDP6 229 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 KDELR3O43731 214 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 DLX3O60479 287 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 POU2F1P14859 743 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 CSTF2P33240 577 aaKnown RBP eCLIP18.66■□□□□ 0.58
UPF1-201ENST00000262803 RYKP34925 604 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 USP43Q70EL4 1123 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 ZC3HC1Q86WB0 502 aaKnown RBP18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms