RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 TMPRSS11EQ9UL52 423 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 COQ6Q9Y2Z9 468 aa20.7■□□□□ 0.9
TRIM28-201ENST00000253024 MYO15AQ9UKN7 3530 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 NEDD8-MDP1E9PL57 170 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 CPNE6O95741 557 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 KIR3DL1P43629 444 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 SKIV2LQ15477 1246 aaKnown RBP20.69■□□□□ 0.9
TRIM28-201ENST00000253024 NPTX1Q15818 432 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 OR4K1Q8NGD4 311 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 OR2AP1Q8NGE2 309 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 ZFP90Q8TF47 636 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 RUBCNLQ9H714 662 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 HMX1Q9NP08 348 aaPredicted RBP20.69■□□□□ 0.9
TRIM28-201ENST00000253024 THG1LQ9NWX6 298 aaKnown RBP20.69■□□□□ 0.9
TRIM28-201ENST00000253024 GMPPBQ9Y5P6 360 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 E7EQ34 232 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 ATP6V1G1O75348 118 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 ETHE1O95571 254 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 LCKP06239 509 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 SRCP12931 536 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 ETV3P41162 512 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 NSG1P42857 185 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 BDKRB1P46663 353 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 NAE1Q13564 534 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 NOXRED1Q6NXP6 359 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 Q6ZNX1 250 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 ZNF420Q8TAQ5 688 aaPredicted RBP20.69■□□□□ 0.9
TRIM28-201ENST00000253024 REXO5Q96IC2 774 aaKnown RBP20.69■□□□□ 0.9
TRIM28-201ENST00000253024 KCNC2Q96PR1 638 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 CORO1BQ9BR76 489 aa20.69■□□□□ 0.9
TRIM28-201ENST00000253024 NDUFS2O75306 463 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 NPPAP01160 153 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 CD22P20273 847 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 MASP1P48740 699 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 CDKN3Q16667 212 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 DCDC5Q6ZRR9 648 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 B3GNT8Q7Z7M8 397 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 GPR149Q86SP6 731 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 TMEM25Q86YD3 366 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 OR5K1Q8NHB7 308 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 SAMD11Q96NU1 681 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 HTATIP2Q9BUP3 242 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 ZDHHC4Q9NPG8 344 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 ACSL6Q9UKU0 697 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 TESMINQ9Y4I5 508 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 INSL5Q9Y5Q6 135 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 EVPLLA8MZ36 301 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 SCELO95171 688 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 CLK3P49761 638 aaKnown RBP20.68■□□□□ 0.9
TRIM28-201ENST00000253024 EPHB3P54753 998 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 MAD2L1Q13257 205 aaPredicted RBP20.68■□□□□ 0.9
TRIM28-201ENST00000253024 CPZQ66K79 652 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 SLC16A12Q6ZSM3 486 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 TRIM46Q7Z4K8 759 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 ZCCHC7Q8N3Z6 543 aaKnown RBP20.68■□□□□ 0.9
TRIM28-201ENST00000253024 OR5AK3PQ8NH89 298 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 HSH2DQ96JZ2 352 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 BRD9Q9H8M2 597 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 KCTD5Q9NXV2 234 aa20.68■□□□□ 0.9
TRIM28-201ENST00000253024 KIAA0100Q14667 2235 aaKnown RBP20.68■□□□□ 0.9
TRIM28-201ENST00000253024 GREM1O60565 184 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 CLPXO76031 633 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 MT-ND2P03891 347 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 AOAHP28039 575 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 MVKQ03426 396 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 FXNQ16595 210 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 GTF2IRD2BQ6EKJ0 949 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 ASTLQ6HA08 431 aaPredicted RBP20.67■□□□□ 0.9
TRIM28-201ENST00000253024 DHRS4L2Q6PKH6 230 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 GTF2IRD2Q86UP8 949 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 ROGDIQ9GZN7 287 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 FAIMQ9NVQ4 179 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 DAPK2Q9UIK4 370 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 CDH7Q9ULB5 785 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 ITM2BQ9Y287 266 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 NADKO95544 446 aaPredicted RBP20.67■□□□□ 0.9
TRIM28-201ENST00000253024 RXRGP48443 463 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 PPP3CCP48454 512 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 SOWAHCQ53LP3 525 aaPredicted RBP20.67■□□□□ 0.9
TRIM28-201ENST00000253024 SPPL2AQ8TCT8 520 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 HDAC2Q92769 488 aaKnown RBP20.67■□□□□ 0.9
TRIM28-201ENST00000253024 USP7Q93009 1102 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 NTMT1Q9BV86 223 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 MRPL17Q9NRX2 175 aaKnown RBP20.67■□□□□ 0.9
TRIM28-201ENST00000253024 GNG14A0A1W2PPG7 69 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 M0R3G1 203 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 TEX28O15482 410 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 FAM20BO75063 409 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 C7P10643 843 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 FRG2Q64ET8 278 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 PRR23BQ6ZRT6 265 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 RORBQ92753 470 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 FRG2BQ96QU4 278 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 DOK1Q99704 481 aa20.67■□□□□ 0.9
TRIM28-201ENST00000253024 MRPL9Q9BYD2 267 aaKnown RBP20.67■□□□□ 0.9
TRIM28-201ENST00000253024 FRMPD3Q5JV73 1810 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 GSTM2P28161 218 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 TM4SF4P48230 202 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 CLDN8P56748 225 aa20.66■□□□□ 0.9
TRIM28-201ENST00000253024 UGT8Q16880 541 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms